=>> Building biology/py-ete3 build started at Mon Dec 29 07:00:42 EST 2025 port directory: /usr/ports/biology/py-ete3 package name: py311-ete3-3.1.3_3 building for: FreeBSD 143amd64-deluxe-desktop-job-03 14.3-RELEASE-p2 FreeBSD 14.3-RELEASE-p2 amd64 maintained by: yuri@FreeBSD.org Makefile datestamp: -rw-r--r-- 1 root wheel 730 Dec 16 05:29 /usr/ports/biology/py-ete3/Makefile Ports top last git commit: 3dd9e2202282 Ports top unclean checkout: yes Port dir last git commit: a6233e5a2fdf Port dir unclean checkout: no Poudriere version: poudriere-git-3.4.4 Host OSVERSION: 1403000 Jail OSVERSION: 1403000 Job Id: 03 ---Begin Environment--- SHELL=/bin/sh OSVERSION=1403000 UNAME_v=FreeBSD 14.3-RELEASE-p2 UNAME_r=14.3-RELEASE-p2 BLOCKSIZE=K MAIL=/var/mail/root MM_CHARSET=UTF-8 LANG=C.UTF-8 STATUS=1 HOME=/root PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin MAKE_OBJDIR_CHECK_WRITABLE=0 LOCALBASE=/usr/local USER=root POUDRIERE_NAME=poudriere-git LIBEXECPREFIX=/usr/local/libexec/poudriere POUDRIERE_VERSION=3.4.4 MASTERMNT=/mnt/data/.m/143amd64-deluxe-desktop/ref LC_COLLATE=C POUDRIERE_BUILD_TYPE=bulk PACKAGE_BUILDING=yes SAVED_TERM=screen GID=0 OUTPUT_REDIRECTED_STDERR=4 OUTPUT_REDIRECTED=1 UID=0 PWD=/mnt/data/.m/143amd64-deluxe-desktop/03/.p OUTPUT_REDIRECTED_STDOUT=3 P_PORTS_FEATURES=FLAVORS SUBPACKAGES SELECTED_OPTIONS MASTERNAME=143amd64-deluxe-desktop SCRIPTPREFIX=/usr/local/share/poudriere SCRIPTNAME=bulk.sh OLDPWD=/mnt/data/.m/143amd64-deluxe-desktop/ref/.p/pool POUDRIERE_PKGNAME=poudriere-git-3.4.4 SCRIPTPATH=/usr/local/share/poudriere/bulk.sh POUDRIEREPATH=/usr/local/bin/poudriere ---End Environment--- ---Begin Poudriere Port Flags/Env--- PORT_FLAGS= PKGENV= FLAVOR=py311 MAKE_ARGS= FLAVOR=py311 ---End Poudriere Port Flags/Env--- ---Begin OPTIONS List--- ---End OPTIONS List--- --MAINTAINER-- yuri@FreeBSD.org --End MAINTAINER-- --CONFIGURE_ARGS-- --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- PYTHON="/usr/local/bin/python3.11" XDG_DATA_HOME=/wrkdirs/usr/ports/biology/py-ete3/work-py311 XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/py-ete3/work-py311 XDG_CACHE_HOME=/wrkdirs/usr/ports/biology/py-ete3/work-py311/.cache HOME=/wrkdirs/usr/ports/biology/py-ete3/work-py311 TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/py-ete3/work-py311/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/biology/py-ete3/work-py311/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig SHELL=/bin/sh CONFIG_SHELL=/bin/sh --End CONFIGURE_ENV-- --MAKE_ENV-- XDG_DATA_HOME=/wrkdirs/usr/ports/biology/py-ete3/work-py311 XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/py-ete3/work-py311 XDG_CACHE_HOME=/wrkdirs/usr/ports/biology/py-ete3/work-py311/.cache HOME=/wrkdirs/usr/ports/biology/py-ete3/work-py311 TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/py-ete3/work-py311/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/biology/py-ete3/work-py311/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES LDSHARED="cc -shared" PYTHONDONTWRITEBYTECODE= PYTHONOPTIMIZE= PREFIX=/usr/local LOCALBASE=/usr/local CC="cc" CFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " CPP="cpp" CPPFLAGS="" LDFLAGS=" " LIBS="" CXX="c++" CXXFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" --End MAKE_ENV-- --PLIST_SUB-- PYTHON_INCLUDEDIR=include/python3.11 PYTHON_LIBDIR=lib/python3.11 PYTHON_PLATFORM=freebsd14 PYTHON_SITELIBDIR=lib/python3.11/site-packages PYTHON_SUFFIX=311 PYTHON_BASESUFFIX=311 PYTHON_TAG=.cpython-311 PYTHON_SOABI=.cpython-311 PYTHON_VER=3.11 PYTHON_BASEVER=3.11 PYTHON_VERSION=python3.11 PYTHON2="@comment " PYTHON3="" PYQT_APIDIR=share/PyQt5/3.11/qsci PYQT_DOCDIR=share/doc/PyQt5/3.11 PYQT_EXAMPLEDIR=share/examples/PyQt5/3.11 PYQT_SIPDIR=/usr/local/lib/python3.11/site-packages/PyQt5/bindings PYQT_DESIGNERDIR=/designer/PyQt5/3.11 PYQT_QMLDIR=/PyQt5/3.11 PYQT_SIPVERSION=6.15.1 PYQT_QSCIVERSION=2.14.1 PYQT_PYQTVERSION=5.15.11 OSREL=14.3 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib DOCSDIR="share/doc/py311-ete3" EXAMPLESDIR="share/examples/py311-ete3" DATADIR="share/py311-ete3" WWWDIR="www/py311-ete3" ETCDIR="etc/py311-ete3" --End PLIST_SUB-- --SUB_LIST-- PYTHON_INCLUDEDIR=/usr/local/include/python3.11 PYTHON_LIBDIR=/usr/local/lib/python3.11 PYTHON_PLATFORM=freebsd14 PYTHON_SITELIBDIR=/usr/local/lib/python3.11/site-packages PYTHON_SUFFIX=311 PYTHON_BASESUFFIX=311 PYTHON_TAG=.cpython-311 PYTHON_SOABI=.cpython-311 PYTHON_VER=3.11 PYTHON_BASEVER=3.11 PYTHON_VERSION=python3.11 PYTHON2="@comment " PYTHON3="" PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/py311-ete3 DOCSDIR=/usr/local/share/doc/py311-ete3 EXAMPLESDIR=/usr/local/share/examples/py311-ete3 WWWDIR=/usr/local/www/py311-ete3 ETCDIR=/usr/local/etc/py311-ete3 --End SUB_LIST-- ---Begin make.conf--- USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles FORCE_PACKAGE=yes PACKAGE_BUILDING=yes PACKAGE_BUILDING_FLAVORS=yes #### #### # Work around some weirdness when fetching golang modules GO_TAGS+=netcgo .if ${.CURDIR:M*/www/chromium*} MAKE_JOBS_NUMBER=24 .endif .if ${.CURDIR:M*/www/ungoogled-chromium*} MAKE_JOBS_NUMBER=24 .endif .if ${.CURDIR:M*/lang/rust*} MAKE_JOBS_NUMBER=10 .endif .if ${.CURDIR:M*/lang/gcc*} MAKE_JOBS_NUMBER=10 .endif .if ${.CURDIR:M*/www/iridium*} MAKE_JOBS_NUMBER=16 .endif .if ${.CURDIR:M*/devel/electron*} MAKE_JOBS_NUMBER=20 .endif .if ${.CURDIR:M*/databases/mongodb*} MAKE_JOBS_NUMBER=12 .endif .if ${.CURDIR:M*/devel/llvm*} MAKE_JOBS_NUMBER=16 .endif # Speed things up a bit MAKE_JOBS_NUMBER?=8 #### #### #MAKE_JOBS_NUMBER?=4 # Alows us to build ports non-interactivly DISABLE_LICENSES=yes LICENSES_ACCEPTED+= DCC # Enable SNDIO on anything that supports it #OPTIONS_SET+=PULSEAUDIO OPTIONS_SET+=SNDIO # Yes we have MS Windows x11-fonts_webfonts_SET+=EXTRAFONTS CLEARTYPE # Desktop Specific Options sysutils_gksu_UNSET+=NAUTILUS x11-wm_compiz-fusion_UNSET+=EMERALD accessibility_redshift_SET+=GUI VIDMODE # These ports default to other audio servers, audio_espeak_UNSET+=PORTAUDIO www_qt5-webengine_UNSET+=ALSA www_qt6-webengine_UNSET+=ALSA audio_rhvoice_UNSET+=AO comms_morse_UNSET+=OSS audio_harp_UNSET+=OSS # Somehow these options are being set and result in ports being rebuilt needlessly becuase they are actually turned off audio_alsa-plugins_SET+=FFMPEG JACK PULSEAUDIO SAMPLERATE SPEEX #### Misc Poudriere #### .include "/etc/make.conf.ports_env" ---End make.conf--- --Resource limits-- cpu time (seconds, -t) unlimited file size (512-blocks, -f) unlimited data seg size (kbytes, -d) 33554432 stack size (kbytes, -s) 524288 core file size (512-blocks, -c) unlimited max memory size (kbytes, -m) unlimited locked memory (kbytes, -l) unlimited max user processes (-u) 89999 open files (-n) 8192 virtual mem size (kbytes, -v) unlimited swap limit (kbytes, -w) unlimited socket buffer size (bytes, -b) unlimited pseudo-terminals (-p) unlimited kqueues (-k) unlimited umtx shared locks (-o) unlimited pipebuf (-y) unlimited --End resource limits-- =================================================== ===== env: NO_DEPENDS=yes USER=nobody UID=65534 GID=65534 =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> py311-ete3-3.1.3_3 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-2.5.1.pkg [143amd64-deluxe-desktop-job-03] Installing pkg-2.5.1... [143amd64-deluxe-desktop-job-03] Extracting pkg-2.5.1: .......... done ===> py311-ete3-3.1.3_3 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of py311-ete3-3.1.3_3 =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Fetching all distfiles required by py311-ete3-3.1.3_3 for building =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Fetching all distfiles required by py311-ete3-3.1.3_3 for building => SHA256 Checksum OK for ete3-3.1.3.tar.gz. =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=nobody UID=65534 GID=65534 ===> Fetching all distfiles required by py311-ete3-3.1.3_3 for building ===> Extracting for py311-ete3-3.1.3_3 => SHA256 Checksum OK for ete3-3.1.3.tar.gz. =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=nobody UID=65534 GID=65534 ===> Patching for py311-ete3-3.1.3_3 =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> py311-ete3-3.1.3_3 depends on package: py311-numpy>=1.16,1<1.27,1 - not found ===> Installing existing package /packages/All/py311-numpy-1.26.4_11,1.pkg [143amd64-deluxe-desktop-job-03] Installing py311-numpy-1.26.4_11,1... [143amd64-deluxe-desktop-job-03] `-- Installing gcc14-14.2.0_4... [143amd64-deluxe-desktop-job-03] | `-- Installing binutils-2.44,1... [143amd64-deluxe-desktop-job-03] | | `-- Installing indexinfo-0.3.1_1... [143amd64-deluxe-desktop-job-03] | | `-- Extracting indexinfo-0.3.1_1: . done [143amd64-deluxe-desktop-job-03] | | `-- Installing zstd-1.5.7_1... [143amd64-deluxe-desktop-job-03] | | `-- Extracting zstd-1.5.7_1: .......... done [143amd64-deluxe-desktop-job-03] | `-- Extracting binutils-2.44,1: .......... done [143amd64-deluxe-desktop-job-03] | `-- Installing gmp-6.3.0... [143amd64-deluxe-desktop-job-03] | `-- Extracting gmp-6.3.0: .......... done [143amd64-deluxe-desktop-job-03] | `-- Installing mpc-1.3.1_1... [143amd64-deluxe-desktop-job-03] | | `-- Installing mpfr-4.2.2,1... [143amd64-deluxe-desktop-job-03] | | `-- Extracting mpfr-4.2.2,1: .......... done [143amd64-deluxe-desktop-job-03] | `-- Extracting mpc-1.3.1_1: ...... done [143amd64-deluxe-desktop-job-03] `-- Extracting gcc14-14.2.0_4: .......... done [143amd64-deluxe-desktop-job-03] `-- Installing openblas-0.3.30,2... [143amd64-deluxe-desktop-job-03] `-- Extracting openblas-0.3.30,2: .......... done [143amd64-deluxe-desktop-job-03] `-- Installing python311-3.11.14... [143amd64-deluxe-desktop-job-03] | `-- Installing gettext-runtime-0.26... [143amd64-deluxe-desktop-job-03] | `-- Extracting gettext-runtime-0.26: .......... done [143amd64-deluxe-desktop-job-03] | `-- Installing libffi-3.5.1... [143amd64-deluxe-desktop-job-03] | `-- Extracting libffi-3.5.1: .......... done [143amd64-deluxe-desktop-job-03] | `-- Installing mpdecimal-4.0.1... [143amd64-deluxe-desktop-job-03] | `-- Extracting mpdecimal-4.0.1: .......... done [143amd64-deluxe-desktop-job-03] | `-- Installing readline-8.3.1... [143amd64-deluxe-desktop-job-03] | `-- Extracting readline-8.3.1: .......... done [143amd64-deluxe-desktop-job-03] `-- Extracting python311-3.11.14: .......... done [143amd64-deluxe-desktop-job-03] `-- Installing suitesparse-umfpack-6.3.7... [143amd64-deluxe-desktop-job-03] | `-- Installing suitesparse-amd-3.3.4... [143amd64-deluxe-desktop-job-03] | | `-- Installing suitesparse-config-7.12.1... [143amd64-deluxe-desktop-job-03] | | `-- Extracting suitesparse-config-7.12.1: .......... done [143amd64-deluxe-desktop-job-03] | `-- Extracting suitesparse-amd-3.3.4: .......... done [143amd64-deluxe-desktop-job-03] | `-- Installing suitesparse-camd-3.3.5... [143amd64-deluxe-desktop-job-03] | `-- Extracting suitesparse-camd-3.3.5: .......... done [143amd64-deluxe-desktop-job-03] | `-- Installing suitesparse-ccolamd-3.3.5... [143amd64-deluxe-desktop-job-03] | `-- Extracting suitesparse-ccolamd-3.3.5: .......... done [143amd64-deluxe-desktop-job-03] | `-- Installing suitesparse-cholmod-5.3.4... [143amd64-deluxe-desktop-job-03] | | `-- Installing suitesparse-colamd-3.3.5... [143amd64-deluxe-desktop-job-03] | | `-- Extracting suitesparse-colamd-3.3.5: .......... done [143amd64-deluxe-desktop-job-03] | `-- Extracting suitesparse-cholmod-5.3.4: .......... done [143amd64-deluxe-desktop-job-03] `-- Extracting suitesparse-umfpack-6.3.7: .......... done [143amd64-deluxe-desktop-job-03] Extracting py311-numpy-1.26.4_11,1: .......... done ===== Message from gcc14-14.2.0_4: -- To ensure binaries built with this toolchain find appropriate versions of the necessary run-time libraries, you may want to link using -Wl,-rpath=/usr/local/lib/gcc14 For ports leveraging USE_GCC, USES=compiler, or USES=fortran this happens transparently. ===== Message from python311-3.11.14: -- Note that some standard Python modules are provided as separate ports as they require additional dependencies. They are available as: py311-gdbm databases/py-gdbm@py311 py311-sqlite3 databases/py-sqlite3@py311 py311-tkinter x11-toolkits/py-tkinter@py311 ===> py311-ete3-3.1.3_3 depends on package: py311-numpy>=1.16,1<1.27,1 - found ===> Returning to build of py311-ete3-3.1.3_3 ===> py311-ete3-3.1.3_3 depends on package: py311-lxml>0 - not found ===> Installing existing package /packages/All/py311-lxml-6.0.1.pkg [143amd64-deluxe-desktop-job-03] Installing py311-lxml-6.0.1... [143amd64-deluxe-desktop-job-03] `-- Installing libxml2-2.14.6... [143amd64-deluxe-desktop-job-03] `-- Extracting libxml2-2.14.6: .......... done [143amd64-deluxe-desktop-job-03] `-- Installing libxslt-1.1.43_1... [143amd64-deluxe-desktop-job-03] | `-- Installing libgcrypt-1.11.2... [143amd64-deluxe-desktop-job-03] | | `-- Installing libgpg-error-1.58... [143amd64-deluxe-desktop-job-03] | | `-- Extracting libgpg-error-1.58: .......... done [143amd64-deluxe-desktop-job-03] | `-- Extracting libgcrypt-1.11.2: .......... done [143amd64-deluxe-desktop-job-03] `-- Extracting libxslt-1.1.43_1: .......... done [143amd64-deluxe-desktop-job-03] Extracting py311-lxml-6.0.1: .......... done ===> py311-ete3-3.1.3_3 depends on package: py311-lxml>0 - found ===> Returning to build of py311-ete3-3.1.3_3 ===> py311-ete3-3.1.3_3 depends on package: py311-six>0 - not found ===> Installing existing package /packages/All/py311-six-1.17.0.pkg [143amd64-deluxe-desktop-job-03] Installing py311-six-1.17.0... [143amd64-deluxe-desktop-job-03] Extracting py311-six-1.17.0: ........ done ===> py311-ete3-3.1.3_3 depends on package: py311-six>0 - found ===> Returning to build of py311-ete3-3.1.3_3 ===> py311-ete3-3.1.3_3 depends on package: py311-setuptools>=63.1.0 - not found ===> Installing existing package /packages/All/py311-setuptools-63.1.0_3.pkg [143amd64-deluxe-desktop-job-03] Installing py311-setuptools-63.1.0_3... [143amd64-deluxe-desktop-job-03] Extracting py311-setuptools-63.1.0_3: .......... done ===> py311-ete3-3.1.3_3 depends on package: py311-setuptools>=63.1.0 - found ===> Returning to build of py311-ete3-3.1.3_3 ===> py311-ete3-3.1.3_3 depends on file: /usr/local/bin/python3.11 - found ===> py311-ete3-3.1.3_3 depends on package: py311-qt5-pyqt>=5.15.11 - not found ===> Installing existing package /packages/All/py311-qt5-pyqt-5.15.11_2.pkg [143amd64-deluxe-desktop-job-03] Installing py311-qt5-pyqt-5.15.11_2... [143amd64-deluxe-desktop-job-03] `-- Installing dbus-1.16.2_4,1... [143amd64-deluxe-desktop-job-03] | `-- Installing expat-2.7.3... [143amd64-deluxe-desktop-job-03] | `-- Extracting expat-2.7.3: .......... done [143amd64-deluxe-desktop-job-03] | `-- Installing libICE-1.1.2,1... [143amd64-deluxe-desktop-job-03] | `-- Extracting libICE-1.1.2,1: .......... done [143amd64-deluxe-desktop-job-03] | `-- Installing libSM-1.2.6,1... [143amd64-deluxe-desktop-job-03] | `-- Extracting libSM-1.2.6,1: ........ done [143amd64-deluxe-desktop-job-03] | `-- Installing libX11-1.8.12,1... [143amd64-deluxe-desktop-job-03] | | `-- Installing libxcb-1.17.0... [143amd64-deluxe-desktop-job-03] | | `-- Installing libXau-1.0.12... [143amd64-deluxe-desktop-job-03] | | `-- Extracting libXau-1.0.12: .......... done [143amd64-deluxe-desktop-job-03] | | `-- Installing libXdmcp-1.1.5... [143amd64-deluxe-desktop-job-03] | | | `-- Installing xorgproto-2024.1... [143amd64-deluxe-desktop-job-03] | | | `-- Extracting xorgproto-2024.1: .......... done [143amd64-deluxe-desktop-job-03] | | `-- Extracting libXdmcp-1.1.5: ...... done [143amd64-deluxe-desktop-job-03] | | `-- Extracting libxcb-1.17.0: .......... done [143amd64-deluxe-desktop-job-03] | `-- Extracting libX11-1.8.12,1: .......... done ===> Creating groups Creating group 'messagebus' with gid '556' ===> Creating users Creating user 'messagebus' with uid '556' [143amd64-deluxe-desktop-job-03] `-- Extracting dbus-1.16.2_4,1: ......... done [143amd64-deluxe-desktop-job-03] `-- Installing libglvnd-1.7.0... [143amd64-deluxe-desktop-job-03] | `-- Installing libXext-1.3.6,1... [143amd64-deluxe-desktop-job-03] | `-- Extracting libXext-1.3.6,1: .......... done [143amd64-deluxe-desktop-job-03] `-- Extracting libglvnd-1.7.0: .......... done [143amd64-deluxe-desktop-job-03] `-- Installing py311-PyQt5-sip-12.17.2... [143amd64-deluxe-desktop-job-03] `-- Extracting py311-PyQt5-sip-12.17.2: ...... done [143amd64-deluxe-desktop-job-03] `-- Installing py311-dbus-1.3.2... [143amd64-deluxe-desktop-job-03] | `-- Installing dbus-glib-0.114... [143amd64-deluxe-desktop-job-03] | | `-- Installing glib-2.84.4,2... [143amd64-deluxe-desktop-job-03] | | `-- Installing libiconv-1.18_1... [143amd64-deluxe-desktop-job-03] | | `-- Extracting libiconv-1.18_1: .......... done [143amd64-deluxe-desktop-job-03] | | `-- Installing libinotify-20240724_3... [143amd64-deluxe-desktop-job-03] | | `-- Extracting libinotify-20240724_3: .......... done [143amd64-deluxe-desktop-job-03] | | `-- Installing pcre2-10.47_1... [143amd64-deluxe-desktop-job-03] | | `-- Extracting pcre2-10.47_1: .......... done [143amd64-deluxe-desktop-job-03] | | `-- Installing py311-packaging-25.0... [143amd64-deluxe-desktop-job-03] | | `-- Extracting py311-packaging-25.0: .......... done [143amd64-deluxe-desktop-job-03] | | `-- Extracting glib-2.84.4,2: .......... done [143amd64-deluxe-desktop-job-03] | `-- Extracting dbus-glib-0.114: .......... done [143amd64-deluxe-desktop-job-03] | `-- Installing pydbus-common-1.3.2... [143amd64-deluxe-desktop-job-03] | `-- Extracting pydbus-common-1.3.2: .......... done [143amd64-deluxe-desktop-job-03] `-- Extracting py311-dbus-1.3.2: .......... done [143amd64-deluxe-desktop-job-03] `-- Installing qt5-connectivity-5.15.18p1... [143amd64-deluxe-desktop-job-03] | `-- Installing qt5-concurrent-5.15.18p109... [143amd64-deluxe-desktop-job-03] | | `-- Installing qt5-core-5.15.18p109... [143amd64-deluxe-desktop-job-03] | | `-- Installing double-conversion-3.3.1... [143amd64-deluxe-desktop-job-03] | | `-- Extracting double-conversion-3.3.1: .......... done [143amd64-deluxe-desktop-job-03] | | `-- Installing icu-76.1,1... [143amd64-deluxe-desktop-job-03] | | `-- Extracting icu-76.1,1: .......... done [143amd64-deluxe-desktop-job-03] | | `-- Extracting qt5-core-5.15.18p109: .......... done [143amd64-deluxe-desktop-job-03] | `-- Extracting qt5-concurrent-5.15.18p109: .......... done [143amd64-deluxe-desktop-job-03] | `-- Installing qt5-declarative-5.15.18p22... [143amd64-deluxe-desktop-job-03] | | `-- Installing qt5-gui-5.15.18p109... [143amd64-deluxe-desktop-job-03] | | `-- Installing encodings-1.1.0,1... [143amd64-deluxe-desktop-job-03] | | `-- Extracting encodings-1.1.0,1: .......... done [143amd64-deluxe-desktop-job-03] | | `-- Installing fontconfig-2.17.1,1... [143amd64-deluxe-desktop-job-03] | | | `-- Installing freetype2-2.14.1... [143amd64-deluxe-desktop-job-03] | | | `-- Installing brotli-1.2.0,1... [143amd64-deluxe-desktop-job-03] | | | `-- Extracting brotli-1.2.0,1: .......... done [143amd64-deluxe-desktop-job-03] | | | `-- Installing png-1.6.53... [143amd64-deluxe-desktop-job-03] | | | `-- Extracting png-1.6.53: .......... done [143amd64-deluxe-desktop-job-03] | | | `-- Extracting freetype2-2.14.1: .......... done [143amd64-deluxe-desktop-job-03] | | `-- Extracting fontconfig-2.17.1,1: .......... done [143amd64-deluxe-desktop-job-03] | | `-- Installing harfbuzz-12.2.0... [143amd64-deluxe-desktop-job-03] | | | `-- Installing graphite2-1.3.14... [143amd64-deluxe-desktop-job-03] | | | `-- Extracting graphite2-1.3.14: .......... done [143amd64-deluxe-desktop-job-03] | | `-- Extracting harfbuzz-12.2.0: .......... done [143amd64-deluxe-desktop-job-03] | | `-- Installing jpeg-turbo-3.1.3... [143amd64-deluxe-desktop-job-03] | | `-- Extracting jpeg-turbo-3.1.3: .......... done [143amd64-deluxe-desktop-job-03] | | `-- Installing libXi-1.8.2,1... [143amd64-deluxe-desktop-job-03] | | | `-- Installing libXfixes-6.0.1... [143amd64-deluxe-desktop-job-03] | | | `-- Extracting libXfixes-6.0.1: ....... done [143amd64-deluxe-desktop-job-03] | | `-- Extracting libXi-1.8.2,1: .......... done [143amd64-deluxe-desktop-job-03] | | `-- Installing libXrender-0.9.12... [143amd64-deluxe-desktop-job-03] | | `-- Extracting libXrender-0.9.12: ....... done [143amd64-deluxe-desktop-job-03] | | `-- Installing libevdev-1.13.2... [143amd64-deluxe-desktop-job-03] | | `-- Extracting libevdev-1.13.2: .......... done [143amd64-deluxe-desktop-job-03] | | `-- Installing libinput-1.28.1... [143amd64-deluxe-desktop-job-03] | | | `-- Installing libepoll-shim-0.0.20240608... [143amd64-deluxe-desktop-job-03] | | | `-- Extracting libepoll-shim-0.0.20240608: .......... done [143amd64-deluxe-desktop-job-03] | | | `-- Installing libmtdev-1.1.7... [143amd64-deluxe-desktop-job-03] | | | `-- Extracting libmtdev-1.1.7: ......... done [143amd64-deluxe-desktop-job-03] | | | `-- Installing libudev-devd-0.6.0... [143amd64-deluxe-desktop-job-03] | | | `-- Extracting libudev-devd-0.6.0: ..... done [143amd64-deluxe-desktop-job-03] | | | `-- Installing libwacom-2.12.1... [143amd64-deluxe-desktop-job-03] | | | `-- Installing libgudev-237... [143amd64-deluxe-desktop-job-03] | | | `-- Extracting libgudev-237: .......... done [143amd64-deluxe-desktop-job-03] | | | `-- Installing py311-libevdev-0.11_2... [143amd64-deluxe-desktop-job-03] | | | `-- Extracting py311-libevdev-0.11_2: .......... done [143amd64-deluxe-desktop-job-03] | | | `-- Extracting libwacom-2.12.1: .......... done [143amd64-deluxe-desktop-job-03] | | | `-- Installing py311-evdev-1.9.1_1... [143amd64-deluxe-desktop-job-03] | | | `-- Extracting py311-evdev-1.9.1_1: .......... done [143amd64-deluxe-desktop-job-03] | | | `-- Installing py311-pyudev-0.24.1_1... [143amd64-deluxe-desktop-job-03] | | | `-- Extracting py311-pyudev-0.24.1_1: .......... done [143amd64-deluxe-desktop-job-03] | | `-- Extracting libinput-1.28.1: .......... done [143amd64-deluxe-desktop-job-03] | | `-- Installing libxkbcommon-1.13.0_1... [143amd64-deluxe-desktop-job-03] | | | `-- Installing wayland-1.24.0_2... [143amd64-deluxe-desktop-job-03] | | | `-- Extracting wayland-1.24.0_2: .......... done [143amd64-deluxe-desktop-job-03] | | | `-- Installing xkeyboard-config-2.41_4... [143amd64-deluxe-desktop-job-03] | | | `-- Extracting xkeyboard-config-2.41_4: .......... done [143amd64-deluxe-desktop-job-03] | | `-- Extracting libxkbcommon-1.13.0_1: .......... done [143amd64-deluxe-desktop-job-03] | | `-- Installing qt5-dbus-5.15.18p109... [143amd64-deluxe-desktop-job-03] | | `-- Extracting qt5-dbus-5.15.18p109: .......... done [143amd64-deluxe-desktop-job-03] | | `-- Installing qt5-network-5.15.18p109... [143amd64-deluxe-desktop-job-03] | | `-- Extracting qt5-network-5.15.18p109: .......... done [143amd64-deluxe-desktop-job-03] | | `-- Installing vulkan-headers-1.4.336... [143amd64-deluxe-desktop-job-03] | | `-- Extracting vulkan-headers-1.4.336: .......... done [143amd64-deluxe-desktop-job-03] | | `-- Installing xcb-util-image-0.4.1... [143amd64-deluxe-desktop-job-03] | | | `-- Installing xcb-util-0.4.1,1... [143amd64-deluxe-desktop-job-03] | | | `-- Extracting xcb-util-0.4.1,1: .......... done [143amd64-deluxe-desktop-job-03] | | `-- Extracting xcb-util-image-0.4.1: ........ done [143amd64-deluxe-desktop-job-03] | | `-- Installing xcb-util-keysyms-0.4.1... [143amd64-deluxe-desktop-job-03] | | `-- Extracting xcb-util-keysyms-0.4.1: ...... done [143amd64-deluxe-desktop-job-03] | | `-- Installing xcb-util-renderutil-0.3.10... [143amd64-deluxe-desktop-job-03] | | `-- Extracting xcb-util-renderutil-0.3.10: ...... done [143amd64-deluxe-desktop-job-03] | | `-- Installing xcb-util-wm-0.4.2... [143amd64-deluxe-desktop-job-03] | | `-- Extracting xcb-util-wm-0.4.2: .......... done [143amd64-deluxe-desktop-job-03] | | `-- Installing xdg-utils-1.2.1... [143amd64-deluxe-desktop-job-03] | | | `-- Installing hicolor-icon-theme-0.18... [143amd64-deluxe-desktop-job-03] | | | `-- Extracting hicolor-icon-theme-0.18: . done [143amd64-deluxe-desktop-job-03] | | | `-- Installing xprop-1.2.8... [143amd64-deluxe-desktop-job-03] | | | `-- Extracting xprop-1.2.8: .. done [143amd64-deluxe-desktop-job-03] | | | `-- Installing xset-1.2.5_1... [143amd64-deluxe-desktop-job-03] | | | `-- Installing libXmu-1.1.4,1... [143amd64-deluxe-desktop-job-03] | | | | `-- Installing libXt-1.3.0,1... [143amd64-deluxe-desktop-job-03] | | | | `-- Extracting libXt-1.3.0,1: .......... done [143amd64-deluxe-desktop-job-03] | | | `-- Extracting libXmu-1.1.4,1: .......... done [143amd64-deluxe-desktop-job-03] | | | `-- Extracting xset-1.2.5_1: .. done [143amd64-deluxe-desktop-job-03] | | `-- Extracting xdg-utils-1.2.1: .......... done [143amd64-deluxe-desktop-job-03] | | `-- Installing xorg-fonts-truetype-7.7_1... [143amd64-deluxe-desktop-job-03] | | | `-- Installing dejavu-2.37_3... [143amd64-deluxe-desktop-job-03] | | | `-- Installing mkfontscale-1.2.3... [143amd64-deluxe-desktop-job-03] | | | | `-- Installing libfontenc-1.1.8... [143amd64-deluxe-desktop-job-03] | | | | `-- Extracting libfontenc-1.1.8: ...... done [143amd64-deluxe-desktop-job-03] | | | `-- Extracting mkfontscale-1.2.3: .... done [143amd64-deluxe-desktop-job-03] | | | `-- Extracting dejavu-2.37_3: .......... done [143amd64-deluxe-desktop-job-03] | | | `-- Installing font-bh-ttf-1.0.3_5... [143amd64-deluxe-desktop-job-03] | | | `-- Extracting font-bh-ttf-1.0.3_5: .......... done [143amd64-deluxe-desktop-job-03] | | | `-- Installing font-misc-ethiopic-1.0.4... [143amd64-deluxe-desktop-job-03] | | | `-- Extracting font-misc-ethiopic-1.0.4: ... done [143amd64-deluxe-desktop-job-03] | | | `-- Installing font-misc-meltho-1.0.3_5... [143amd64-deluxe-desktop-job-03] | | | `-- Extracting font-misc-meltho-1.0.3_5: .......... done [143amd64-deluxe-desktop-job-03] | | `-- Extracting qt5-gui-5.15.18p109: .......... done [143amd64-deluxe-desktop-job-03] | | `-- Installing qt5-sql-5.15.18p109... [143amd64-deluxe-desktop-job-03] | | `-- Extracting qt5-sql-5.15.18p109: .......... done [143amd64-deluxe-desktop-job-03] | | `-- Installing qt5-widgets-5.15.18p109... [143amd64-deluxe-desktop-job-03] | | `-- Extracting qt5-widgets-5.15.18p109: .......... done [143amd64-deluxe-desktop-job-03] | `-- Extracting qt5-declarative-5.15.18p22: .......... done [143amd64-deluxe-desktop-job-03] `-- Extracting qt5-connectivity-5.15.18p1: .......... done [143amd64-deluxe-desktop-job-03] `-- Installing qt5-designer-5.15.18p3... [143amd64-deluxe-desktop-job-03] | `-- Installing qt5-assistant-5.15.18p3... [143amd64-deluxe-desktop-job-03] | | `-- Installing qt5-help-5.15.18p3... [143amd64-deluxe-desktop-job-03] | | `-- Installing qt5-sqldrivers-sqlite3-5.15.18p109... [143amd64-deluxe-desktop-job-03] | | | `-- Installing sqlite3-3.50.4_2,1... [143amd64-deluxe-desktop-job-03] | | | `-- Installing libedit-3.1.20251016_1,1... [143amd64-deluxe-desktop-job-03] | | | `-- Extracting libedit-3.1.20251016_1,1: .......... done [143amd64-deluxe-desktop-job-03] | | | `-- Extracting sqlite3-3.50.4_2,1: .......... done [143amd64-deluxe-desktop-job-03] | | `-- Extracting qt5-sqldrivers-sqlite3-5.15.18p109: .. done [143amd64-deluxe-desktop-job-03] | | `-- Extracting qt5-help-5.15.18p3: .......... done [143amd64-deluxe-desktop-job-03] | | `-- Installing qt5-printsupport-5.15.18p109... [143amd64-deluxe-desktop-job-03] | | `-- Installing cups-2.4.16... [143amd64-deluxe-desktop-job-03] | | | `-- Installing avahi-app-0.8_6... [143amd64-deluxe-desktop-job-03] | | | `-- Installing gdbm-1.26... [143amd64-deluxe-desktop-job-03] | | | `-- Extracting gdbm-1.26: .......... done [143amd64-deluxe-desktop-job-03] | | | `-- Installing gnome_subr-1.0... [143amd64-deluxe-desktop-job-03] | | | `-- Extracting gnome_subr-1.0: . done [143amd64-deluxe-desktop-job-03] | | | `-- Installing libdaemon-0.14_1... [143amd64-deluxe-desktop-job-03] | | | `-- Extracting libdaemon-0.14_1: .......... done [143amd64-deluxe-desktop-job-03] | | | `-- Installing libevent-2.1.12... [143amd64-deluxe-desktop-job-03] | | | `-- Extracting libevent-2.1.12: .......... done ===> Creating groups Creating group 'avahi' with gid '558' ===> Creating users Creating user 'avahi' with uid '558' [143amd64-deluxe-desktop-job-03] | | | `-- Extracting avahi-app-0.8_6: .......... done [143amd64-deluxe-desktop-job-03] | | | `-- Installing gnutls-3.8.11... [143amd64-deluxe-desktop-job-03] | | | `-- Installing libidn2-2.3.8... [143amd64-deluxe-desktop-job-03] | | | | `-- Installing libunistring-1.4.1... [143amd64-deluxe-desktop-job-03] | | | | `-- Extracting libunistring-1.4.1: .......... done [143amd64-deluxe-desktop-job-03] | | | `-- Extracting libidn2-2.3.8: .......... done [143amd64-deluxe-desktop-job-03] | | | `-- Installing libtasn1-4.20.0_1... [143amd64-deluxe-desktop-job-03] | | | `-- Extracting libtasn1-4.20.0_1: .......... done [143amd64-deluxe-desktop-job-03] | | | `-- Installing nettle-3.10.2... [143amd64-deluxe-desktop-job-03] | | | `-- Extracting nettle-3.10.2: .......... done [143amd64-deluxe-desktop-job-03] | | | `-- Installing p11-kit-0.25.10... [143amd64-deluxe-desktop-job-03] | | | `-- Extracting p11-kit-0.25.10: .......... done [143amd64-deluxe-desktop-job-03] | | | `-- Extracting gnutls-3.8.11: .......... done [143amd64-deluxe-desktop-job-03] | | | `-- Installing libpaper-1.1.28_1... [143amd64-deluxe-desktop-job-03] | | | `-- Extracting libpaper-1.1.28_1: .......... done ===> Creating groups Creating group 'cups' with gid '193' ===> Creating users Creating user 'cups' with uid '193' [143amd64-deluxe-desktop-job-03] | | `-- Extracting cups-2.4.16: .......... done [143amd64-deluxe-desktop-job-03] | | `-- Extracting qt5-printsupport-5.15.18p109: .......... done [143amd64-deluxe-desktop-job-03] | `-- Extracting qt5-assistant-5.15.18p3: ... done [143amd64-deluxe-desktop-job-03] | `-- Installing qt5-uiplugin-5.15.18p3... [143amd64-deluxe-desktop-job-03] | `-- Extracting qt5-uiplugin-5.15.18p3: .......... done [143amd64-deluxe-desktop-job-03] | `-- Installing qt5-xml-5.15.18p109... [143amd64-deluxe-desktop-job-03] | `-- Extracting qt5-xml-5.15.18p109: .......... done [143amd64-deluxe-desktop-job-03] `-- Extracting qt5-designer-5.15.18p3: .......... done [143amd64-deluxe-desktop-job-03] `-- Installing qt5-imageformats-5.15.18p2... [143amd64-deluxe-desktop-job-03] | `-- Installing jasper-4.2.8... [143amd64-deluxe-desktop-job-03] | `-- Extracting jasper-4.2.8: .......... done [143amd64-deluxe-desktop-job-03] | `-- Installing libmng-2.0.3_2... [143amd64-deluxe-desktop-job-03] | | `-- Installing lcms2-2.17... [143amd64-deluxe-desktop-job-03] | | `-- Installing tiff-4.7.1... [143amd64-deluxe-desktop-job-03] | | | `-- Installing jbigkit-2.1_3... [143amd64-deluxe-desktop-job-03] | | | `-- Extracting jbigkit-2.1_3: .......... done [143amd64-deluxe-desktop-job-03] | | | `-- Installing lerc-4.0.0... [143amd64-deluxe-desktop-job-03] | | | `-- Extracting lerc-4.0.0: ..... done [143amd64-deluxe-desktop-job-03] | | | `-- Installing libdeflate-1.25... [143amd64-deluxe-desktop-job-03] | | | `-- Extracting libdeflate-1.25: .......... done [143amd64-deluxe-desktop-job-03] | | `-- Extracting tiff-4.7.1: .......... done [143amd64-deluxe-desktop-job-03] | | `-- Extracting lcms2-2.17: .......... done [143amd64-deluxe-desktop-job-03] | `-- Extracting libmng-2.0.3_2: ......... done [143amd64-deluxe-desktop-job-03] | `-- Installing webp-1.6.0... [143amd64-deluxe-desktop-job-03] | | `-- Installing giflib-5.2.2... [143amd64-deluxe-desktop-job-03] | | `-- Extracting giflib-5.2.2: .......... done [143amd64-deluxe-desktop-job-03] | `-- Extracting webp-1.6.0: .......... done [143amd64-deluxe-desktop-job-03] `-- Extracting qt5-imageformats-5.15.18p2: .......... done [143amd64-deluxe-desktop-job-03] `-- Installing qt5-location-5.15.18p7... [143amd64-deluxe-desktop-job-03] | `-- Installing qt5-serialport-5.15.18p0... [143amd64-deluxe-desktop-job-03] | `-- Extracting qt5-serialport-5.15.18p0: .......... done [143amd64-deluxe-desktop-job-03] `-- Extracting qt5-location-5.15.18p7: .......... done [143amd64-deluxe-desktop-job-03] `-- Installing qt5-multimedia-5.15.18p2... [143amd64-deluxe-desktop-job-03] | `-- Installing alsa-lib-1.2.14... [143amd64-deluxe-desktop-job-03] | `-- Extracting alsa-lib-1.2.14: .......... done [143amd64-deluxe-desktop-job-03] | `-- Installing alsa-plugins-1.2.12_2... [143amd64-deluxe-desktop-job-03] | | `-- Installing ffmpeg-8.0.1,1... [143amd64-deluxe-desktop-job-03] | | `-- Installing aom-3.13.1... [143amd64-deluxe-desktop-job-03] | | | `-- Installing vmaf-3.0.0... [143amd64-deluxe-desktop-job-03] | | | `-- Extracting vmaf-3.0.0: .......... done [143amd64-deluxe-desktop-job-03] | | `-- Extracting aom-3.13.1: .......... done [143amd64-deluxe-desktop-job-03] | | `-- Installing cairo-1.18.2,3... [143amd64-deluxe-desktop-job-03] | | | `-- Installing lzo2-2.10_1... [143amd64-deluxe-desktop-job-03] | | | `-- Extracting lzo2-2.10_1: .......... done [143amd64-deluxe-desktop-job-03] | | | `-- Installing pixman-0.46.2... [143amd64-deluxe-desktop-job-03] | | | `-- Extracting pixman-0.46.2: ...... done [143amd64-deluxe-desktop-job-03] | | `-- Extracting cairo-1.18.2,3: .......... done [143amd64-deluxe-desktop-job-03] | | `-- Installing dav1d-1.5.2... [143amd64-deluxe-desktop-job-03] | | `-- Extracting dav1d-1.5.2: .......... done [143amd64-deluxe-desktop-job-03] | | `-- Installing gdk-pixbuf2-2.44.1... [143amd64-deluxe-desktop-job-03] | | | `-- Installing shared-mime-info-2.4_2... [143amd64-deluxe-desktop-job-03] | | | `-- Extracting shared-mime-info-2.4_2: ......... done [143amd64-deluxe-desktop-job-03] | | `-- Extracting gdk-pixbuf2-2.44.1: .......... done [143amd64-deluxe-desktop-job-03] | | `-- Installing lame-3.100_5... [143amd64-deluxe-desktop-job-03] | | `-- Extracting lame-3.100_5: .......... done [143amd64-deluxe-desktop-job-03] | | `-- Installing libXv-1.0.13,1... [143amd64-deluxe-desktop-job-03] | | `-- Extracting libXv-1.0.13,1: .......... done [143amd64-deluxe-desktop-job-03] | | `-- Installing libass-0.17.4... [143amd64-deluxe-desktop-job-03] | | | `-- Installing fribidi-1.0.16... [143amd64-deluxe-desktop-job-03] | | | `-- Extracting fribidi-1.0.16: .......... done [143amd64-deluxe-desktop-job-03] | | | `-- Installing libunibreak-6.1,1... [143amd64-deluxe-desktop-job-03] | | | `-- Extracting libunibreak-6.1,1: .......... done [143amd64-deluxe-desktop-job-03] | | `-- Extracting libass-0.17.4: ....... done [143amd64-deluxe-desktop-job-03] | | `-- Installing libbluray-1.4.0,1... [143amd64-deluxe-desktop-job-03] | | | `-- Installing libudfread-1.2.0... [143amd64-deluxe-desktop-job-03] | | | `-- Extracting libudfread-1.2.0: ....... done [143amd64-deluxe-desktop-job-03] | | `-- Extracting libbluray-1.4.0,1: .......... done [143amd64-deluxe-desktop-job-03] | | `-- Installing libdrm-2.4.131,1... [143amd64-deluxe-desktop-job-03] | | | `-- Installing libpciaccess-0.18.1_1... [143amd64-deluxe-desktop-job-03] | | | `-- Installing hwdata-0.402,1... [143amd64-deluxe-desktop-job-03] | | | `-- Extracting hwdata-0.402,1: ...... done [143amd64-deluxe-desktop-job-03] | | | `-- Extracting libpciaccess-0.18.1_1: ..... done [143amd64-deluxe-desktop-job-03] | | `-- Extracting libdrm-2.4.131,1: .......... done [143amd64-deluxe-desktop-job-03] | | `-- Installing libdvdnav-7.0.0... [143amd64-deluxe-desktop-job-03] | | | `-- Installing libdvdread-7.0.0... [143amd64-deluxe-desktop-job-03] | | | `-- Extracting libdvdread-7.0.0: .......... done [143amd64-deluxe-desktop-job-03] | | `-- Extracting libdvdnav-7.0.0: .......... done [143amd64-deluxe-desktop-job-03] | | `-- Installing libjxl-0.11.1_2... [143amd64-deluxe-desktop-job-03] | | | `-- Installing highway-1.3.0... [143amd64-deluxe-desktop-job-03] | | | `-- Extracting highway-1.3.0: .......... done [143amd64-deluxe-desktop-job-03] | | | `-- Installing openexr-3.4.4... [143amd64-deluxe-desktop-job-03] | | | `-- Installing Imath-3.2.2_1... [143amd64-deluxe-desktop-job-03] | | | `-- Extracting Imath-3.2.2_1: .......... done [143amd64-deluxe-desktop-job-03] | | | `-- Installing openjph-0.25.3... [143amd64-deluxe-desktop-job-03] | | | `-- Extracting openjph-0.25.3: .......... done [143amd64-deluxe-desktop-job-03] | | | `-- Extracting openexr-3.4.4: .......... done [143amd64-deluxe-desktop-job-03] | | `-- Extracting libjxl-0.11.1_2: .......... done [143amd64-deluxe-desktop-job-03] | | `-- Installing libplacebo-7.351.0_1... [143amd64-deluxe-desktop-job-03] | | | `-- Installing libunwind-20250904... [143amd64-deluxe-desktop-job-03] | | | `-- Extracting libunwind-20250904: .......... done [143amd64-deluxe-desktop-job-03] | | | `-- Installing shaderc-2025.5_1... [143amd64-deluxe-desktop-job-03] | | | `-- Extracting shaderc-2025.5_1: .......... done [143amd64-deluxe-desktop-job-03] | | | `-- Installing vulkan-loader-1.4.336... [143amd64-deluxe-desktop-job-03] | | | `-- Installing libXrandr-1.5.4... [143amd64-deluxe-desktop-job-03] | | | `-- Extracting libXrandr-1.5.4: .......... done [143amd64-deluxe-desktop-job-03] | | | `-- Extracting vulkan-loader-1.4.336: ....... done [143amd64-deluxe-desktop-job-03] | | | `-- Installing xxhash-0.8.3... [143amd64-deluxe-desktop-job-03] | | | `-- Extracting xxhash-0.8.3: .......... done [143amd64-deluxe-desktop-job-03] | | `-- Extracting libplacebo-7.351.0_1: .......... done [143amd64-deluxe-desktop-job-03] | | `-- Installing librsvg2-rust-2.61.3... [143amd64-deluxe-desktop-job-03] | | | `-- Installing pango-1.56.4... [143amd64-deluxe-desktop-job-03] | | | `-- Installing libXft-2.3.8... [143amd64-deluxe-desktop-job-03] | | | `-- Extracting libXft-2.3.8: .......... done [143amd64-deluxe-desktop-job-03] | | | `-- Installing libthai-0.1.29_2... [143amd64-deluxe-desktop-job-03] | | | | `-- Installing libdatrie-0.2.14_1... [143amd64-deluxe-desktop-job-03] | | | | `-- Extracting libdatrie-0.2.14_1: .......... done [143amd64-deluxe-desktop-job-03] | | | `-- Extracting libthai-0.1.29_2: .......... done [143amd64-deluxe-desktop-job-03] | | | `-- Extracting pango-1.56.4: .......... done [143amd64-deluxe-desktop-job-03] | | `-- Extracting librsvg2-rust-2.61.3: .......... done [143amd64-deluxe-desktop-job-03] | | `-- Installing libv4l-1.23.0_5... [143amd64-deluxe-desktop-job-03] | | `-- Extracting libv4l-1.23.0_5: .......... done [143amd64-deluxe-desktop-job-03] | | `-- Installing libva-2.22.0_1... [143amd64-deluxe-desktop-job-03] | | `-- Extracting libva-2.22.0_1: .......... done [143amd64-deluxe-desktop-job-03] | | `-- Installing libvdpau-1.5... [143amd64-deluxe-desktop-job-03] | | `-- Extracting libvdpau-1.5: .......... done [143amd64-deluxe-desktop-job-03] | | `-- Installing libvorbis-1.3.7_2,3... [143amd64-deluxe-desktop-job-03] | | | `-- Installing libogg-1.3.6,4... [143amd64-deluxe-desktop-job-03] | | | `-- Extracting libogg-1.3.6,4: .......... done [143amd64-deluxe-desktop-job-03] | | `-- Extracting libvorbis-1.3.7_2,3: .......... done [143amd64-deluxe-desktop-job-03] | | `-- Installing libvpx-1.15.2... [143amd64-deluxe-desktop-job-03] | | `-- Extracting libvpx-1.15.2: .......... done [143amd64-deluxe-desktop-job-03] | | `-- Installing libx264-0.164.3095... [143amd64-deluxe-desktop-job-03] | | `-- Extracting libx264-0.164.3095: ...... done [143amd64-deluxe-desktop-job-03] | | `-- Installing opus-1.6... [143amd64-deluxe-desktop-job-03] | | `-- Extracting opus-1.6: .......... done [143amd64-deluxe-desktop-job-03] | | `-- Installing sndio-1.10.0_1... ===> Creating groups Creating group '_sndio' with gid '702' ===> Creating users Creating user '_sndio' with uid '702' [143amd64-deluxe-desktop-job-03] | | `-- Extracting sndio-1.10.0_1: .......... done [143amd64-deluxe-desktop-job-03] | | `-- Installing srt-1.5.4... [143amd64-deluxe-desktop-job-03] | | | `-- Installing bash-5.3.9... [143amd64-deluxe-desktop-job-03] | | | `-- Extracting bash-5.3.9: .......... done [143amd64-deluxe-desktop-job-03] | | `-- Extracting srt-1.5.4: .......... done [143amd64-deluxe-desktop-job-03] | | `-- Installing svt-av1-3.1.2... [143amd64-deluxe-desktop-job-03] | | `-- Extracting svt-av1-3.1.2: .......... done [143amd64-deluxe-desktop-job-03] | | `-- Installing x265-4.1... [143amd64-deluxe-desktop-job-03] | | `-- Extracting x265-4.1: .......... done [143amd64-deluxe-desktop-job-03] | | `-- Extracting ffmpeg-8.0.1,1: .......... done [143amd64-deluxe-desktop-job-03] | | `-- Installing jackit-1.9.22_3... [143amd64-deluxe-desktop-job-03] | | `-- Installing libsamplerate-0.2.2_1... [143amd64-deluxe-desktop-job-03] | | | `-- Installing libsndfile-1.2.2_2... [143amd64-deluxe-desktop-job-03] | | | `-- Installing flac-1.5.0,1... [143amd64-deluxe-desktop-job-03] | | | `-- Extracting flac-1.5.0,1: .......... done [143amd64-deluxe-desktop-job-03] | | | `-- Installing mpg123-1.33.4... [143amd64-deluxe-desktop-job-03] | | | `-- Extracting mpg123-1.33.4: .......... done [143amd64-deluxe-desktop-job-03] | | | `-- Extracting libsndfile-1.2.2_2: .......... done [143amd64-deluxe-desktop-job-03] | | `-- Extracting libsamplerate-0.2.2_1: .......... done [143amd64-deluxe-desktop-job-03] | | `-- Installing libsysinfo-0.0.3_3... [143amd64-deluxe-desktop-job-03] | | `-- Extracting libsysinfo-0.0.3_3: ...... done [143amd64-deluxe-desktop-job-03] | | `-- Extracting jackit-1.9.22_3: .......... done [143amd64-deluxe-desktop-job-03] | | `-- Installing pulseaudio-17.0_4... [143amd64-deluxe-desktop-job-03] | | `-- Installing consolekit2-1.2.6_5... [143amd64-deluxe-desktop-job-03] | | | `-- Installing polkit-125_1... [143amd64-deluxe-desktop-job-03] | | | `-- Installing duktape-lib-2.7.0_1... [143amd64-deluxe-desktop-job-03] | | | `-- Extracting duktape-lib-2.7.0_1: ...... done ===> Creating groups Creating group 'polkitd' with gid '565' ===> Creating users Creating user 'polkitd' with uid '565' [143amd64-deluxe-desktop-job-03] | | | `-- Extracting polkit-125_1: ......... done [143amd64-deluxe-desktop-job-03] | | `-- Extracting consolekit2-1.2.6_5: ......... done [143amd64-deluxe-desktop-job-03] | | `-- Installing fftw3-3.3.10_5... [143amd64-deluxe-desktop-job-03] | | `-- Extracting fftw3-3.3.10_5: .......... done [143amd64-deluxe-desktop-job-03] | | `-- Installing fftw3-float-3.3.10_5... [143amd64-deluxe-desktop-job-03] | | `-- Extracting fftw3-float-3.3.10_5: .......... done [143amd64-deluxe-desktop-job-03] | | `-- Installing libXtst-1.2.5... [143amd64-deluxe-desktop-job-03] | | `-- Extracting libXtst-1.2.5: .......... done [143amd64-deluxe-desktop-job-03] | | `-- Installing libltdl-2.5.4... [143amd64-deluxe-desktop-job-03] | | `-- Extracting libltdl-2.5.4: ......... done [143amd64-deluxe-desktop-job-03] | | `-- Installing libsoxr-0.1.3_3... [143amd64-deluxe-desktop-job-03] | | `-- Extracting libsoxr-0.1.3_3: .......... done [143amd64-deluxe-desktop-job-03] | | `-- Installing orc-0.4.41_1... [143amd64-deluxe-desktop-job-03] | | `-- Extracting orc-0.4.41_1: .......... done [143amd64-deluxe-desktop-job-03] | | `-- Installing speexdsp-1.2.1... [143amd64-deluxe-desktop-job-03] | | `-- Extracting speexdsp-1.2.1: .......... done [143amd64-deluxe-desktop-job-03] | | `-- Installing webrtc-audio-processing-1.3_1... [143amd64-deluxe-desktop-job-03] | | | `-- Installing abseil-20250127.1... [143amd64-deluxe-desktop-job-03] | | | `-- Extracting abseil-20250127.1: .......... done [143amd64-deluxe-desktop-job-03] | | `-- Extracting webrtc-audio-processing-1.3_1: .......... done ===> Creating groups Creating group 'pulse' with gid '563' Creating group 'pulse-access' with gid '564' Creating group 'pulse-rt' with gid '557' ===> Creating users Creating user 'pulse' with uid '563' [143amd64-deluxe-desktop-job-03] | | `-- Extracting pulseaudio-17.0_4: .......... done [143amd64-deluxe-desktop-job-03] | `-- Extracting alsa-plugins-1.2.12_2: .......... done [143amd64-deluxe-desktop-job-03] | `-- Installing gstreamer1-1.26.9_1... [143amd64-deluxe-desktop-job-03] | `-- Extracting gstreamer1-1.26.9_1: .......... done [143amd64-deluxe-desktop-job-03] | `-- Installing gstreamer1-plugins-1.26.9... [143amd64-deluxe-desktop-job-03] | | `-- Installing iso-codes-4.19.0... [143amd64-deluxe-desktop-job-03] | | `-- Extracting iso-codes-4.19.0: .......... done [143amd64-deluxe-desktop-job-03] | `-- Extracting gstreamer1-plugins-1.26.9: .......... done [143amd64-deluxe-desktop-job-03] | `-- Installing gstreamer1-plugins-bad-1.26.9... [143amd64-deluxe-desktop-job-03] | | `-- Installing json-glib-1.10.8... [143amd64-deluxe-desktop-job-03] | | `-- Installing gobject-introspection-1.84.0,1... [143amd64-deluxe-desktop-job-03] | | `-- Extracting gobject-introspection-1.84.0,1: .......... done [143amd64-deluxe-desktop-job-03] | | `-- Extracting json-glib-1.10.8: .......... done [143amd64-deluxe-desktop-job-03] | `-- Extracting gstreamer1-plugins-bad-1.26.9: .......... done [143amd64-deluxe-desktop-job-03] | `-- Installing openal-soft-1.24.3... [143amd64-deluxe-desktop-job-03] | | `-- Installing libmysofa-1.3.3... [143amd64-deluxe-desktop-job-03] | | `-- Extracting libmysofa-1.3.3: .......... done [143amd64-deluxe-desktop-job-03] | `-- Extracting openal-soft-1.24.3: .......... done [143amd64-deluxe-desktop-job-03] | `-- Installing qt5-opengl-5.15.18p109... [143amd64-deluxe-desktop-job-03] | `-- Extracting qt5-opengl-5.15.18p109: .......... done [143amd64-deluxe-desktop-job-03] `-- Extracting qt5-multimedia-5.15.18p2: .......... done [143amd64-deluxe-desktop-job-03] `-- Installing qt5-quick3d-5.15.18p1... [143amd64-deluxe-desktop-job-03] | `-- Installing assimp-6.0.2... [143amd64-deluxe-desktop-job-03] | `-- Extracting assimp-6.0.2: .......... done [143amd64-deluxe-desktop-job-03] `-- Extracting qt5-quick3d-5.15.18p1: .......... done [143amd64-deluxe-desktop-job-03] `-- Installing qt5-remoteobjects-5.15.18p0... [143amd64-deluxe-desktop-job-03] `-- Extracting qt5-remoteobjects-5.15.18p0: .......... done [143amd64-deluxe-desktop-job-03] `-- Installing qt5-sensors-5.15.18p0... [143amd64-deluxe-desktop-job-03] `-- Extracting qt5-sensors-5.15.18p0: .......... done [143amd64-deluxe-desktop-job-03] `-- Installing qt5-speech-5.15.18p1... [143amd64-deluxe-desktop-job-03] | `-- Installing speech-dispatcher-0.12.1... [143amd64-deluxe-desktop-job-03] | | `-- Installing dotconf-1.4.1_1... [143amd64-deluxe-desktop-job-03] | | `-- Extracting dotconf-1.4.1_1: .......... done [143amd64-deluxe-desktop-job-03] | | `-- Installing espeak-ng-1.52.0_1... [143amd64-deluxe-desktop-job-03] | | `-- Installing pcaudiolib-1.2_2... [143amd64-deluxe-desktop-job-03] | | `-- Extracting pcaudiolib-1.2_2: ..... done [143amd64-deluxe-desktop-job-03] | | `-- Extracting espeak-ng-1.52.0_1: .......... done [143amd64-deluxe-desktop-job-03] | `-- Extracting speech-dispatcher-0.12.1: .......... done [143amd64-deluxe-desktop-job-03] `-- Extracting qt5-speech-5.15.18p1: .......... done [143amd64-deluxe-desktop-job-03] `-- Installing qt5-svg-5.15.18p5... [143amd64-deluxe-desktop-job-03] `-- Extracting qt5-svg-5.15.18p5: .......... done [143amd64-deluxe-desktop-job-03] `-- Installing qt5-testlib-5.15.18p109... [143amd64-deluxe-desktop-job-03] `-- Extracting qt5-testlib-5.15.18p109: .......... done [143amd64-deluxe-desktop-job-03] `-- Installing qt5-webchannel-5.15.18p3... [143amd64-deluxe-desktop-job-03] `-- Extracting qt5-webchannel-5.15.18p3: .......... done [143amd64-deluxe-desktop-job-03] `-- Installing qt5-websockets-5.15.18p2... [143amd64-deluxe-desktop-job-03] `-- Extracting qt5-websockets-5.15.18p2: .......... done [143amd64-deluxe-desktop-job-03] `-- Installing qt5-x11extras-5.15.18p0... [143amd64-deluxe-desktop-job-03] `-- Extracting qt5-x11extras-5.15.18p0: .......... done [143amd64-deluxe-desktop-job-03] `-- Installing qt5-xmlpatterns-5.15.18p0... [143amd64-deluxe-desktop-job-03] `-- Extracting qt5-xmlpatterns-5.15.18p0: .......... done [143amd64-deluxe-desktop-job-03] Extracting py311-qt5-pyqt-5.15.11_2: .......... done ==> Running trigger: fontconfig.ucl Running fc-cache to build fontconfig cache... ==> Running trigger: gdk-pixbuf-query-loaders.ucl Generating gdk-pixbuf modules cache ==> Running trigger: gio-modules.ucl Generating GIO modules cache ==> Running trigger: glib-schemas.ucl Compiling glib schemas No schema files found: doing nothing. ==> Running trigger: shared-mime-info.ucl Building the Shared MIME-Info database cache ===== Message from libinotify-20240724_3: -- You might want to consider increasing the kern.maxfiles tunable if you plan to use this library for applications that need to monitor activity of a lot of files. ===== Message from freetype2-2.14.1: -- The 2.7.x series now uses the new subpixel hinting mode (V40 port's option) as the default, emulating a modern version of ClearType. This change inevitably leads to different rendering results, and you might change port's options to adapt it to your taste (or use the new "FREETYPE_PROPERTIES" environment variable). The environment variable "FREETYPE_PROPERTIES" can be used to control the driver properties. Example: FREETYPE_PROPERTIES=truetype:interpreter-version=35 \ cff:no-stem-darkening=1 \ autofitter:warping=1 This allows to select, say, the subpixel hinting mode at runtime for a given application. If LONG_PCF_NAMES port's option was enabled, the PCF family names may include the foundry and information whether they contain wide characters. For example, "Sony Fixed" or "Misc Fixed Wide", instead of "Fixed". This can be disabled at run time with using pcf:no-long-family-names property, if needed. Example: FREETYPE_PROPERTIES=pcf:no-long-family-names=1 How to recreate fontconfig cache with using such environment variable, if needed: # env FREETYPE_PROPERTIES=pcf:no-long-family-names=1 fc-cache -fsv The controllable properties are listed in the section "Controlling FreeType Modules" in the reference's table of contents (/usr/local/share/doc/freetype2/reference/index.html, if documentation was installed). ===== Message from wayland-1.24.0_2: -- Wayland requires XDG_RUNTIME_DIR to be defined to a path that will contain "wayland-%d" unix(4) sockets. This is usually handled by consolekit2 (via ck-launch-session) or pam_xdg (via login). ===== Message from libxkbcommon-1.13.0_1: -- If arrow keys don't work under X11 switch to legacy rules e.g., For sh/bash/ksh/zsh run and (optionally) add into ~/.profile: export XKB_DEFAULT_RULES=xorg For csh/tcsh run and (optionally) add into ~/.login: setenv XKB_DEFAULT_RULES xorg ===== Message from dejavu-2.37_3: -- Make sure that the freetype module is loaded. If it is not, add the following line to the "Modules" section of your X Windows configuration file: Load "freetype" Add the following line to the "Files" section of X Windows configuration file: FontPath "/usr/local/share/fonts/dejavu/" Note: your X Windows configuration file is typically /etc/X11/XF86Config if you are using XFree86, and /etc/X11/xorg.conf if you are using X.Org. ===== Message from qt5-sql-5.15.18p109: -- To enable Qt database support, install the database plugin ports. The following plugin ports are available: - databases/qt5-sqldrivers-mysql MySQL - databases/qt5-sqldrivers-odbc Open Database Connectivity - databases/qt5-sqldrivers-pgsql PostgreSQL - databases/qt5-sqldrivers-sqlite2 SQLite 2 - databases/qt5-sqldrivers-sqlite3 SQLite 3 - databases/qt5-sqldrivers-tds FreeTDS ===== Message from libjxl-0.11.1_2: -- Additional packages recommended for new users: - imlib2-jxl (e.g., feh, scrot) - kf5-kimageformats (e.g., nomacs, flameshot, skanlite) - gimp-jxl-plugin ===== Message from jackit-1.9.22_3: -- The new JACK server comes with a DBUS control interface: $ jack_control help $ jack_control ds oss $ jack_control dp $ jack_control dps rate 48000 $ jack_control dps wordlength 16 $ jack_control dps capture /dev/dsp0 $ jack_control dps playback /dev/dsp0 $ jack_control eps realtime False $ jack_control start To use real-time priority for JACK server and clients, load the mac_priority(4) module and add the JACK user to the realtime group. Memory locking has to be allowed in /etc/login.conf or ~/.login_conf. Set the resource limit ":memorylocked=unlimited:" and don't forget to run # cap_mkdb /etc/login.conf It's still possible to start JACK server as an RC service for a dedicated user. Note that only one JACK server can be run at a time. An /etc/rc.conf example: jackd_enable="YES" jackd_user="joe" jackd_args="--no-realtime -doss -r48000 -p1024 -w16 \ --capture /dev/dsp0 --playback /dev/dsp0" Official JACK example clients and tools are available as jack-example-tools. JACK 1.9.22 introduces a latency correction fix. Latency correction parameters have to be measured again after an update. ===== Message from pulseaudio-17.0_4: -- Pulseaudio tries to determine default values for FreeBSD OSS driver at first start, based on /dev/sndstat output. The hw.snd.default_unit sysctl may affect these values, but restart of the Pulseaudio might be needed to rescan it again, e.g. `pacmd exit`. Pulseaudio has separate input and output configure lines. You can change them with using following commands: To change the default sink (output): # pacmd set-default-sink 3 To change the default source (input): # pacmd set-default-source 3 This can also be set in /usr/local/etc/pulse/default.pa Replace the number '3' with the new default you want to set. The audio/freedesktop-sound-theme is needed if the default sound files are uncommented in the /usr/local/etc/pulse/default.pa file. ===== Message from alsa-plugins-1.2.12_2: -- ===> NOTICE: The alsa-plugins port currently does not have a maintainer. As a result, it is more likely to have unresolved issues, not be up-to-date, or even be removed in the future. To volunteer to maintain this port, please create an issue at: https://bugs.freebsd.org/bugzilla More information about port maintainership is available at: https://docs.freebsd.org/en/articles/contributing/#ports-contributing ===> py311-ete3-3.1.3_3 depends on package: py311-qt5-pyqt>=5.15.11 - found ===> Returning to build of py311-ete3-3.1.3_3 =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=nobody UID=65534 GID=65534 ===> Configuring for py311-ete3-3.1.3_3 running config =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=nobody UID=65534 GID=65534 ===> Building for py311-ete3-3.1.3_3 running build running build_py creating build creating build/lib creating build/lib/ete3 copying ete3/_ph.py -> build/lib/ete3 copying ete3/__init__.py -> build/lib/ete3 copying ete3/version.py -> build/lib/ete3 copying ete3/utils.py -> build/lib/ete3 copying ete3/citation.py -> build/lib/ete3 running egg_info writing ete3.egg-info/PKG-INFO writing dependency_links to ete3.egg-info/dependency_links.txt writing entry points to ete3.egg-info/entry_points.txt writing top-level names to ete3.egg-info/top_level.txt reading manifest file 'ete3.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no directories found matching 'doc' warning: no previously-included files matching '*.pyc' found anywhere in distribution warning: no previously-included files matching '*.pyo' found anywhere in distribution warning: no previously-included files matching '~*' found anywhere in distribution warning: no previously-included files matching '*~' found anywhere in distribution warning: manifest_maker: MANIFEST.in, line 17: 'global-exclude' expects ... warning: no previously-included files matching '*.gz' found anywhere in distribution adding license file 'LICENSE' writing manifest file 'ete3.egg-info/SOURCES.txt' /usr/local/lib/python3.11/site-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning: Installing 'ete3.clustering' as data is deprecated, please list it in `packages`. !! ############################ # Package would be ignored # ############################ Python recognizes 'ete3.clustering' as an importable package, but it is not listed in the `packages` configuration of setuptools. 'ete3.clustering' has been automatically added to the distribution only because it may contain data files, but this behavior is likely to change in future versions of setuptools (and therefore is considered deprecated). Please make sure that 'ete3.clustering' is included as a package by using the `packages` configuration field or the proper discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" and "data files" on setuptools documentation page. !! check.warn(importable) /usr/local/lib/python3.11/site-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning: Installing 'ete3.coretype' as data is deprecated, please list it in `packages`. !! ############################ # Package would be ignored # ############################ Python recognizes 'ete3.coretype' as an importable package, but it is not listed in the `packages` configuration of setuptools. 'ete3.coretype' has been automatically added to the distribution only because it may contain data files, but this behavior is likely to change in future versions of setuptools (and therefore is considered deprecated). Please make sure that 'ete3.coretype' is included as a package by using the `packages` configuration field or the proper discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" and "data files" on setuptools documentation page. !! check.warn(importable) /usr/local/lib/python3.11/site-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning: Installing 'ete3.evol' as data is deprecated, please list it in `packages`. !! ############################ # Package would be ignored # ############################ Python recognizes 'ete3.evol' as an importable package, but it is not listed in the `packages` configuration of setuptools. 'ete3.evol' has been automatically added to the distribution only because it may contain data files, but this behavior is likely to change in future versions of setuptools (and therefore is considered deprecated). Please make sure that 'ete3.evol' is included as a package by using the `packages` configuration field or the proper discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" and "data files" on setuptools documentation page. !! check.warn(importable) /usr/local/lib/python3.11/site-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning: Installing 'ete3.evol.parser' as data is deprecated, please list it in `packages`. !! ############################ # Package would be ignored # ############################ Python recognizes 'ete3.evol.parser' as an importable package, but it is not listed in the `packages` configuration of setuptools. 'ete3.evol.parser' has been automatically added to the distribution only because it may contain data files, but this behavior is likely to change in future versions of setuptools (and therefore is considered deprecated). Please make sure that 'ete3.evol.parser' is included as a package by using the `packages` configuration field or the proper discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" and "data files" on setuptools documentation page. !! check.warn(importable) /usr/local/lib/python3.11/site-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning: Installing 'ete3.ncbi_taxonomy' as data is deprecated, please list it in `packages`. !! ############################ # Package would be ignored # ############################ Python recognizes 'ete3.ncbi_taxonomy' as an importable package, but it is not listed in the `packages` configuration of setuptools. 'ete3.ncbi_taxonomy' has been automatically added to the distribution only because it may contain data files, but this behavior is likely to change in future versions of setuptools (and therefore is considered deprecated). Please make sure that 'ete3.ncbi_taxonomy' is included as a package by using the `packages` configuration field or the proper discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" and "data files" on setuptools documentation page. !! check.warn(importable) /usr/local/lib/python3.11/site-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning: Installing 'ete3.nexml' as data is deprecated, please list it in `packages`. !! ############################ # Package would be ignored # ############################ Python recognizes 'ete3.nexml' as an importable package, but it is not listed in the `packages` configuration of setuptools. 'ete3.nexml' has been automatically added to the distribution only because it may contain data files, but this behavior is likely to change in future versions of setuptools (and therefore is considered deprecated). Please make sure that 'ete3.nexml' is included as a package by using the `packages` configuration field or the proper discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" and "data files" on setuptools documentation page. !! check.warn(importable) /usr/local/lib/python3.11/site-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning: Installing 'ete3.orthoxml' as data is deprecated, please list it in `packages`. !! ############################ # Package would be ignored # ############################ Python recognizes 'ete3.orthoxml' as an importable package, but it is not listed in the `packages` configuration of setuptools. 'ete3.orthoxml' has been automatically added to the distribution only because it may contain data files, but this behavior is likely to change in future versions of setuptools (and therefore is considered deprecated). Please make sure that 'ete3.orthoxml' is included as a package by using the `packages` configuration field or the proper discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" and "data files" on setuptools documentation page. !! check.warn(importable) /usr/local/lib/python3.11/site-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning: Installing 'ete3.parser' as data is deprecated, please list it in `packages`. !! ############################ # Package would be ignored # ############################ Python recognizes 'ete3.parser' as an importable package, but it is not listed in the `packages` configuration of setuptools. 'ete3.parser' has been automatically added to the distribution only because it may contain data files, but this behavior is likely to change in future versions of setuptools (and therefore is considered deprecated). Please make sure that 'ete3.parser' is included as a package by using the `packages` configuration field or the proper discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" and "data files" on setuptools documentation page. !! check.warn(importable) /usr/local/lib/python3.11/site-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning: Installing 'ete3.phylo' as data is deprecated, please list it in `packages`. !! ############################ # Package would be ignored # ############################ Python recognizes 'ete3.phylo' as an importable package, but it is not listed in the `packages` configuration of setuptools. 'ete3.phylo' has been automatically added to the distribution only because it may contain data files, but this behavior is likely to change in future versions of setuptools (and therefore is considered deprecated). Please make sure that 'ete3.phylo' is included as a package by using the `packages` configuration field or the proper discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" and "data files" on setuptools documentation page. !! check.warn(importable) /usr/local/lib/python3.11/site-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning: Installing 'ete3.phylomedb' as data is deprecated, please list it in `packages`. !! ############################ # Package would be ignored # ############################ Python recognizes 'ete3.phylomedb' as an importable package, but it is not listed in the `packages` configuration of setuptools. 'ete3.phylomedb' has been automatically added to the distribution only because it may contain data files, but this behavior is likely to change in future versions of setuptools (and therefore is considered deprecated). Please make sure that 'ete3.phylomedb' is included as a package by using the `packages` configuration field or the proper discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" and "data files" on setuptools documentation page. !! check.warn(importable) /usr/local/lib/python3.11/site-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning: Installing 'ete3.phyloxml' as data is deprecated, please list it in `packages`. !! ############################ # Package would be ignored # ############################ Python recognizes 'ete3.phyloxml' as an importable package, but it is not listed in the `packages` configuration of setuptools. 'ete3.phyloxml' has been automatically added to the distribution only because it may contain data files, but this behavior is likely to change in future versions of setuptools (and therefore is considered deprecated). Please make sure that 'ete3.phyloxml' is included as a package by using the `packages` configuration field or the proper discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" and "data files" on setuptools documentation page. !! check.warn(importable) /usr/local/lib/python3.11/site-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning: Installing 'ete3.test' as data is deprecated, please list it in `packages`. !! ############################ # Package would be ignored # ############################ Python recognizes 'ete3.test' as an importable package, but it is not listed in the `packages` configuration of setuptools. 'ete3.test' has been automatically added to the distribution only because it may contain data files, but this behavior is likely to change in future versions of setuptools (and therefore is considered deprecated). Please make sure that 'ete3.test' is included as a package by using the `packages` configuration field or the proper discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" and "data files" on setuptools documentation page. !! check.warn(importable) /usr/local/lib/python3.11/site-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning: Installing 'ete3.test.ete_evol_data.CladeModelCD' as data is deprecated, please list it in `packages`. !! ############################ # Package would be ignored # ############################ Python recognizes 'ete3.test.ete_evol_data.CladeModelCD' as an importable package, but it is not listed in the `packages` configuration of setuptools. 'ete3.test.ete_evol_data.CladeModelCD' has been automatically added to the distribution only because it may contain data files, but this behavior is likely to change in future versions of setuptools (and therefore is considered deprecated). Please make sure that 'ete3.test.ete_evol_data.CladeModelCD' is included as a package by using the `packages` configuration field or the proper discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" and "data files" on setuptools documentation page. !! check.warn(importable) /usr/local/lib/python3.11/site-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning: Installing 'ete3.test.ete_evol_data.L_example' as data is deprecated, please list it in `packages`. !! ############################ # Package would be ignored # ############################ Python recognizes 'ete3.test.ete_evol_data.L_example' as an importable package, but it is not listed in the `packages` configuration of setuptools. 'ete3.test.ete_evol_data.L_example' has been automatically added to the distribution only because it may contain data files, but this behavior is likely to change in future versions of setuptools (and therefore is considered deprecated). Please make sure that 'ete3.test.ete_evol_data.L_example' is included as a package by using the `packages` configuration field or the proper discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" and "data files" on setuptools documentation page. !! check.warn(importable) /usr/local/lib/python3.11/site-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning: Installing 'ete3.test.ete_evol_data.S_example' as data is deprecated, please list it in `packages`. !! ############################ # Package would be ignored # ############################ Python recognizes 'ete3.test.ete_evol_data.S_example' as an importable package, but it is not listed in the `packages` configuration of setuptools. 'ete3.test.ete_evol_data.S_example' has been automatically added to the distribution only because it may contain data files, but this behavior is likely to change in future versions of setuptools (and therefore is considered deprecated). Please make sure that 'ete3.test.ete_evol_data.S_example' is included as a package by using the `packages` configuration field or the proper discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" and "data files" on setuptools documentation page. !! check.warn(importable) /usr/local/lib/python3.11/site-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning: Installing 'ete3.test.ete_evol_data.S_example.paml.M1' as data is deprecated, please list it in `packages`. !! ############################ # Package would be ignored # ############################ Python recognizes 'ete3.test.ete_evol_data.S_example.paml.M1' as an importable package, but it is not listed in the `packages` configuration of setuptools. 'ete3.test.ete_evol_data.S_example.paml.M1' has been automatically added to the distribution only because it may contain data files, but this behavior is likely to change in future versions of setuptools (and therefore is considered deprecated). Please make sure that 'ete3.test.ete_evol_data.S_example.paml.M1' is included as a package by using the `packages` configuration field or the proper discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" and "data files" on setuptools documentation page. !! check.warn(importable) /usr/local/lib/python3.11/site-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning: Installing 'ete3.test.ete_evol_data.S_example.paml.M2' as data is deprecated, please list it in `packages`. !! ############################ # Package would be ignored # ############################ Python recognizes 'ete3.test.ete_evol_data.S_example.paml.M2' as an importable package, but it is not listed in the `packages` configuration of setuptools. 'ete3.test.ete_evol_data.S_example.paml.M2' has been automatically added to the distribution only because it may contain data files, but this behavior is likely to change in future versions of setuptools (and therefore is considered deprecated). Please make sure that 'ete3.test.ete_evol_data.S_example.paml.M2' is included as a package by using the `packages` configuration field or the proper discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" and "data files" on setuptools documentation page. !! check.warn(importable) /usr/local/lib/python3.11/site-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning: Installing 'ete3.test.ete_evol_data.S_example.paml.bsA' as data is deprecated, please list it in `packages`. !! ############################ # Package would be ignored # ############################ Python recognizes 'ete3.test.ete_evol_data.S_example.paml.bsA' as an importable package, but it is not listed in the `packages` configuration of setuptools. 'ete3.test.ete_evol_data.S_example.paml.bsA' has been automatically added to the distribution only because it may contain data files, but this behavior is likely to change in future versions of setuptools (and therefore is considered deprecated). Please make sure that 'ete3.test.ete_evol_data.S_example.paml.bsA' is included as a package by using the `packages` configuration field or the proper discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" and "data files" on setuptools documentation page. !! check.warn(importable) /usr/local/lib/python3.11/site-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning: Installing 'ete3.test.ete_evol_data.S_example.paml.bsA1' as data is deprecated, please list it in `packages`. !! ############################ # Package would be ignored # ############################ Python recognizes 'ete3.test.ete_evol_data.S_example.paml.bsA1' as an importable package, but it is not listed in the `packages` configuration of setuptools. 'ete3.test.ete_evol_data.S_example.paml.bsA1' has been automatically added to the distribution only because it may contain data files, but this behavior is likely to change in future versions of setuptools (and therefore is considered deprecated). Please make sure that 'ete3.test.ete_evol_data.S_example.paml.bsA1' is included as a package by using the `packages` configuration field or the proper discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" and "data files" on setuptools documentation page. !! check.warn(importable) /usr/local/lib/python3.11/site-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning: Installing 'ete3.test.ete_evol_data.S_example.paml.fb' as data is deprecated, please list it in `packages`. !! ############################ # Package would be ignored # ############################ Python recognizes 'ete3.test.ete_evol_data.S_example.paml.fb' as an importable package, but it is not listed in the `packages` configuration of setuptools. 'ete3.test.ete_evol_data.S_example.paml.fb' has been automatically added to the distribution only because it may contain data files, but this behavior is likely to change in future versions of setuptools (and therefore is considered deprecated). Please make sure that 'ete3.test.ete_evol_data.S_example.paml.fb' is included as a package by using the `packages` configuration field or the proper discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" and "data files" on setuptools documentation page. !! check.warn(importable) /usr/local/lib/python3.11/site-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning: Installing 'ete3.test.ete_evol_data.XS_example' as data is deprecated, please list it in `packages`. !! ############################ # Package would be ignored # ############################ Python recognizes 'ete3.test.ete_evol_data.XS_example' as an importable package, but it is not listed in the `packages` configuration of setuptools. 'ete3.test.ete_evol_data.XS_example' has been automatically added to the distribution only because it may contain data files, but this behavior is likely to change in future versions of setuptools (and therefore is considered deprecated). Please make sure that 'ete3.test.ete_evol_data.XS_example' is included as a package by using the `packages` configuration field or the proper discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" and "data files" on setuptools documentation page. !! check.warn(importable) /usr/local/lib/python3.11/site-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning: Installing 'ete3.test.ete_evol_data.protamine.PRM1' as data is deprecated, please list it in `packages`. !! ############################ # Package would be ignored # ############################ Python recognizes 'ete3.test.ete_evol_data.protamine.PRM1' as an importable package, but it is not listed in the `packages` configuration of setuptools. 'ete3.test.ete_evol_data.protamine.PRM1' has been automatically added to the distribution only because it may contain data files, but this behavior is likely to change in future versions of setuptools (and therefore is considered deprecated). Please make sure that 'ete3.test.ete_evol_data.protamine.PRM1' is included as a package by using the `packages` configuration field or the proper discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" and "data files" on setuptools documentation page. !! check.warn(importable) /usr/local/lib/python3.11/site-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning: Installing 'ete3.test.ete_evol_data.protamine.PRM1.paml.M0' as data is deprecated, please list it in `packages`. !! ############################ # Package would be ignored # ############################ Python recognizes 'ete3.test.ete_evol_data.protamine.PRM1.paml.M0' as an importable package, but it is not listed in the `packages` configuration of setuptools. 'ete3.test.ete_evol_data.protamine.PRM1.paml.M0' has been automatically added to the distribution only because it may contain data files, but this behavior is likely to change in future versions of setuptools (and therefore is considered deprecated). Please make sure that 'ete3.test.ete_evol_data.protamine.PRM1.paml.M0' is included as a package by using the `packages` configuration field or the proper discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" and "data files" on setuptools documentation page. !! check.warn(importable) /usr/local/lib/python3.11/site-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning: Installing 'ete3.test.ete_evol_data.protamine.PRM1.paml.M1' as data is deprecated, please list it in `packages`. !! ############################ # Package would be ignored # ############################ Python recognizes 'ete3.test.ete_evol_data.protamine.PRM1.paml.M1' as an importable package, but it is not listed in the `packages` configuration of setuptools. 'ete3.test.ete_evol_data.protamine.PRM1.paml.M1' has been automatically added to the distribution only because it may contain data files, but this behavior is likely to change in future versions of setuptools (and therefore is considered deprecated). Please make sure that 'ete3.test.ete_evol_data.protamine.PRM1.paml.M1' is included as a package by using the `packages` configuration field or the proper discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" and "data files" on setuptools documentation page. !! check.warn(importable) /usr/local/lib/python3.11/site-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning: Installing 'ete3.test.ete_evol_data.protamine.PRM1.paml.M2' as data is deprecated, please list it in `packages`. !! ############################ # Package would be ignored # ############################ Python recognizes 'ete3.test.ete_evol_data.protamine.PRM1.paml.M2' as an importable package, but it is not listed in the `packages` configuration of setuptools. 'ete3.test.ete_evol_data.protamine.PRM1.paml.M2' has been automatically added to the distribution only because it may contain data files, but this behavior is likely to change in future versions of setuptools (and therefore is considered deprecated). Please make sure that 'ete3.test.ete_evol_data.protamine.PRM1.paml.M2' is included as a package by using the `packages` configuration field or the proper discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" and "data files" on setuptools documentation page. !! check.warn(importable) /usr/local/lib/python3.11/site-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning: Installing 'ete3.test.ete_evol_data.protamine.PRM1.paml.M7' as data is deprecated, please list it in `packages`. !! ############################ # Package would be ignored # ############################ Python recognizes 'ete3.test.ete_evol_data.protamine.PRM1.paml.M7' as an importable package, but it is not listed in the `packages` configuration of setuptools. 'ete3.test.ete_evol_data.protamine.PRM1.paml.M7' has been automatically added to the distribution only because it may contain data files, but this behavior is likely to change in future versions of setuptools (and therefore is considered deprecated). Please make sure that 'ete3.test.ete_evol_data.protamine.PRM1.paml.M7' is included as a package by using the `packages` configuration field or the proper discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" and "data files" on setuptools documentation page. !! check.warn(importable) /usr/local/lib/python3.11/site-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning: Installing 'ete3.test.ete_evol_data.protamine.PRM1.paml.M8' as data is deprecated, please list it in `packages`. !! ############################ # Package would be ignored # ############################ Python recognizes 'ete3.test.ete_evol_data.protamine.PRM1.paml.M8' as an importable package, but it is not listed in the `packages` configuration of setuptools. 'ete3.test.ete_evol_data.protamine.PRM1.paml.M8' has been automatically added to the distribution only because it may contain data files, but this behavior is likely to change in future versions of setuptools (and therefore is considered deprecated). Please make sure that 'ete3.test.ete_evol_data.protamine.PRM1.paml.M8' is included as a package by using the `packages` configuration field or the proper discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" and "data files" on setuptools documentation page. !! check.warn(importable) /usr/local/lib/python3.11/site-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning: Installing 'ete3.test.ete_evol_data.protamine.PRM1.paml.fb' as data is deprecated, please list it in `packages`. !! ############################ # Package would be ignored # ############################ Python recognizes 'ete3.test.ete_evol_data.protamine.PRM1.paml.fb' as an importable package, but it is not listed in the `packages` configuration of setuptools. 'ete3.test.ete_evol_data.protamine.PRM1.paml.fb' has been automatically added to the distribution only because it may contain data files, but this behavior is likely to change in future versions of setuptools (and therefore is considered deprecated). Please make sure that 'ete3.test.ete_evol_data.protamine.PRM1.paml.fb' is included as a package by using the `packages` configuration field or the proper discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" and "data files" on setuptools documentation page. !! check.warn(importable) /usr/local/lib/python3.11/site-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning: Installing 'ete3.test.ete_evol_data.protamine.PRM1.slr' as data is deprecated, please list it in `packages`. !! ############################ # Package would be ignored # ############################ Python recognizes 'ete3.test.ete_evol_data.protamine.PRM1.slr' as an importable package, but it is not listed in the `packages` configuration of setuptools. 'ete3.test.ete_evol_data.protamine.PRM1.slr' has been automatically added to the distribution only because it may contain data files, but this behavior is likely to change in future versions of setuptools (and therefore is considered deprecated). Please make sure that 'ete3.test.ete_evol_data.protamine.PRM1.slr' is included as a package by using the `packages` configuration field or the proper discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" and "data files" on setuptools documentation page. !! check.warn(importable) /usr/local/lib/python3.11/site-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning: Installing 'ete3.test.test_ete_build' as data is deprecated, please list it in `packages`. !! ############################ # Package would be ignored # ############################ Python recognizes 'ete3.test.test_ete_build' as an importable package, but it is not listed in the `packages` configuration of setuptools. 'ete3.test.test_ete_build' has been automatically added to the distribution only because it may contain data files, but this behavior is likely to change in future versions of setuptools (and therefore is considered deprecated). Please make sure that 'ete3.test.test_ete_build' is included as a package by using the `packages` configuration field or the proper discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" and "data files" on setuptools documentation page. !! check.warn(importable) /usr/local/lib/python3.11/site-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning: Installing 'ete3.test.test_issue258' as data is deprecated, please list it in `packages`. !! ############################ # Package would be ignored # ############################ Python recognizes 'ete3.test.test_issue258' as an importable package, but it is not listed in the `packages` configuration of setuptools. 'ete3.test.test_issue258' has been automatically added to the distribution only because it may contain data files, but this behavior is likely to change in future versions of setuptools (and therefore is considered deprecated). Please make sure that 'ete3.test.test_issue258' is included as a package by using the `packages` configuration field or the proper discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" and "data files" on setuptools documentation page. !! check.warn(importable) /usr/local/lib/python3.11/site-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning: Installing 'ete3.test.test_treeview' as data is deprecated, please list it in `packages`. !! ############################ # Package would be ignored # ############################ Python recognizes 'ete3.test.test_treeview' as an importable package, but it is not listed in the `packages` configuration of setuptools. 'ete3.test.test_treeview' has been automatically added to the distribution only because it may contain data files, but this behavior is likely to change in future versions of setuptools (and therefore is considered deprecated). Please make sure that 'ete3.test.test_treeview' is included as a package by using the `packages` configuration field or the proper discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" and "data files" on setuptools documentation page. !! check.warn(importable) /usr/local/lib/python3.11/site-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning: Installing 'ete3.tools' as data is deprecated, please list it in `packages`. !! ############################ # Package would be ignored # ############################ Python recognizes 'ete3.tools' as an importable package, but it is not listed in the `packages` configuration of setuptools. 'ete3.tools' has been automatically added to the distribution only because it may contain data files, but this behavior is likely to change in future versions of setuptools (and therefore is considered deprecated). Please make sure that 'ete3.tools' is included as a package by using the `packages` configuration field or the proper discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" and "data files" on setuptools documentation page. !! check.warn(importable) /usr/local/lib/python3.11/site-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning: Installing 'ete3.tools.ete_build_lib' as data is deprecated, please list it in `packages`. !! ############################ # Package would be ignored # ############################ Python recognizes 'ete3.tools.ete_build_lib' as an importable package, but it is not listed in the `packages` configuration of setuptools. 'ete3.tools.ete_build_lib' has been automatically added to the distribution only because it may contain data files, but this behavior is likely to change in future versions of setuptools (and therefore is considered deprecated). Please make sure that 'ete3.tools.ete_build_lib' is included as a package by using the `packages` configuration field or the proper discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" and "data files" on setuptools documentation page. !! check.warn(importable) /usr/local/lib/python3.11/site-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning: Installing 'ete3.tools.ete_build_lib.task' as data is deprecated, please list it in `packages`. !! ############################ # Package would be ignored # ############################ Python recognizes 'ete3.tools.ete_build_lib.task' as an importable package, but it is not listed in the `packages` configuration of setuptools. 'ete3.tools.ete_build_lib.task' has been automatically added to the distribution only because it may contain data files, but this behavior is likely to change in future versions of setuptools (and therefore is considered deprecated). Please make sure that 'ete3.tools.ete_build_lib.task' is included as a package by using the `packages` configuration field or the proper discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" and "data files" on setuptools documentation page. !! check.warn(importable) /usr/local/lib/python3.11/site-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning: Installing 'ete3.tools.ete_build_lib.workflow' as data is deprecated, please list it in `packages`. !! ############################ # Package would be ignored # ############################ Python recognizes 'ete3.tools.ete_build_lib.workflow' as an importable package, but it is not listed in the `packages` configuration of setuptools. 'ete3.tools.ete_build_lib.workflow' has been automatically added to the distribution only because it may contain data files, but this behavior is likely to change in future versions of setuptools (and therefore is considered deprecated). Please make sure that 'ete3.tools.ete_build_lib.workflow' is included as a package by using the `packages` configuration field or the proper discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" and "data files" on setuptools documentation page. !! check.warn(importable) /usr/local/lib/python3.11/site-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning: Installing 'ete3.treeview' as data is deprecated, please list it in `packages`. !! ############################ # Package would be ignored # ############################ Python recognizes 'ete3.treeview' as an importable package, but it is not listed in the `packages` configuration of setuptools. 'ete3.treeview' has been automatically added to the distribution only because it may contain data files, but this behavior is likely to change in future versions of setuptools (and therefore is considered deprecated). Please make sure that 'ete3.treeview' is included as a package by using the `packages` configuration field or the proper discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" and "data files" on setuptools documentation page. !! check.warn(importable) /usr/local/lib/python3.11/site-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning: Installing 'ete3.webplugin' as data is deprecated, please list it in `packages`. !! ############################ # Package would be ignored # ############################ Python recognizes 'ete3.webplugin' as an importable package, but it is not listed in the `packages` configuration of setuptools. 'ete3.webplugin' has been automatically added to the distribution only because it may contain data files, but this behavior is likely to change in future versions of setuptools (and therefore is considered deprecated). Please make sure that 'ete3.webplugin' is included as a package by using the `packages` configuration field or the proper discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" and "data files" on setuptools documentation page. !! check.warn(importable) creating build/lib/ete3/clustering copying ete3/clustering/__init__.py -> build/lib/ete3/clustering copying ete3/clustering/clustertree.py -> build/lib/ete3/clustering copying ete3/clustering/clustvalidation.py -> build/lib/ete3/clustering creating build/lib/ete3/coretype copying ete3/coretype/__init__.py -> build/lib/ete3/coretype copying ete3/coretype/arraytable.py -> build/lib/ete3/coretype copying ete3/coretype/seqgroup.py -> build/lib/ete3/coretype copying ete3/coretype/tree.py -> build/lib/ete3/coretype creating build/lib/ete3/evol copying ete3/evol/__init__.py -> build/lib/ete3/evol copying ete3/evol/control.py -> build/lib/ete3/evol copying ete3/evol/evoltree.py -> build/lib/ete3/evol copying ete3/evol/model.py -> build/lib/ete3/evol copying ete3/evol/utils.py -> build/lib/ete3/evol creating build/lib/ete3/evol/parser copying ete3/evol/parser/__init__.py -> build/lib/ete3/evol/parser copying ete3/evol/parser/codemlparser.py -> build/lib/ete3/evol/parser copying ete3/evol/parser/slrparser.py -> build/lib/ete3/evol/parser creating build/lib/ete3/ncbi_taxonomy copying ete3/ncbi_taxonomy/__init__.py -> build/lib/ete3/ncbi_taxonomy copying ete3/ncbi_taxonomy/ncbiquery.py -> build/lib/ete3/ncbi_taxonomy creating build/lib/ete3/ncbi_taxonomy/SQLite-Levenshtein copying ete3/ncbi_taxonomy/SQLite-Levenshtein/.gitignore -> build/lib/ete3/ncbi_taxonomy/SQLite-Levenshtein copying ete3/ncbi_taxonomy/SQLite-Levenshtein/EXAMPLE -> build/lib/ete3/ncbi_taxonomy/SQLite-Levenshtein copying ete3/ncbi_taxonomy/SQLite-Levenshtein/Makefile -> build/lib/ete3/ncbi_taxonomy/SQLite-Levenshtein copying ete3/ncbi_taxonomy/SQLite-Levenshtein/README -> build/lib/ete3/ncbi_taxonomy/SQLite-Levenshtein creating build/lib/ete3/ncbi_taxonomy/SQLite-Levenshtein/src copying ete3/ncbi_taxonomy/SQLite-Levenshtein/src/levenshtein.c -> build/lib/ete3/ncbi_taxonomy/SQLite-Levenshtein/src creating build/lib/ete3/ncbi_taxonomy/SQLite-Levenshtein/tests copying ete3/ncbi_taxonomy/SQLite-Levenshtein/tests/README -> build/lib/ete3/ncbi_taxonomy/SQLite-Levenshtein/tests copying ete3/ncbi_taxonomy/SQLite-Levenshtein/tests/levenshtein-test.sql -> build/lib/ete3/ncbi_taxonomy/SQLite-Levenshtein/tests creating build/lib/ete3/nexml copying ete3/nexml/__init__.py -> build/lib/ete3/nexml copying ete3/nexml/_nexml.py -> build/lib/ete3/nexml copying ete3/nexml/_nexml_tree.py -> build/lib/ete3/nexml creating build/lib/ete3/orthoxml copying ete3/orthoxml/__init__.py -> build/lib/ete3/orthoxml copying ete3/orthoxml/_orthoxml.py -> build/lib/ete3/orthoxml creating build/lib/ete3/parser copying ete3/parser/__init__.py -> build/lib/ete3/parser copying ete3/parser/fasta.py -> build/lib/ete3/parser copying ete3/parser/newick.py -> build/lib/ete3/parser copying ete3/parser/paml.py -> build/lib/ete3/parser copying ete3/parser/phylip.py -> build/lib/ete3/parser copying ete3/parser/text_arraytable.py -> build/lib/ete3/parser creating build/lib/ete3/phylo copying ete3/phylo/__init__.py -> build/lib/ete3/phylo copying ete3/phylo/evolevents.py -> build/lib/ete3/phylo copying ete3/phylo/phylotree.py -> build/lib/ete3/phylo copying ete3/phylo/reconciliation.py -> build/lib/ete3/phylo copying ete3/phylo/spoverlap.py -> build/lib/ete3/phylo creating build/lib/ete3/phylomedb copying ete3/phylomedb/__init__.py -> build/lib/ete3/phylomedb copying ete3/phylomedb/phylomeDB.py -> build/lib/ete3/phylomedb copying ete3/phylomedb/phylomeDB3.py -> build/lib/ete3/phylomedb creating build/lib/ete3/phyloxml copying ete3/phyloxml/__init__.py -> build/lib/ete3/phyloxml copying ete3/phyloxml/_phyloxml.py -> build/lib/ete3/phyloxml copying ete3/phyloxml/_phyloxml_tree.py -> build/lib/ete3/phyloxml creating build/lib/ete3/test copying ete3/test/__init__.py -> build/lib/ete3/test copying ete3/test/datasets.py -> build/lib/ete3/test copying ete3/test/test_all.py -> build/lib/ete3/test copying ete3/test/test_api.py -> build/lib/ete3/test copying ete3/test/test_arraytable.py -> build/lib/ete3/test copying ete3/test/test_circle_label.py -> build/lib/ete3/test copying ete3/test/test_clustertree.py -> build/lib/ete3/test copying ete3/test/test_ete_evol.py -> build/lib/ete3/test copying ete3/test/test_evol.py -> build/lib/ete3/test copying ete3/test/test_interop.py -> build/lib/ete3/test copying ete3/test/test_ncbiquery.py -> build/lib/ete3/test copying ete3/test/test_phylotree.py -> build/lib/ete3/test copying ete3/test/test_seqgroup.py -> build/lib/ete3/test copying ete3/test/test_tree.py -> build/lib/ete3/test copying ete3/test/test_xml_parsers.py -> build/lib/ete3/test creating build/lib/ete3/test/ete_evol_data creating build/lib/ete3/test/ete_evol_data/CladeModelCD copying ete3/test/ete_evol_data/CladeModelCD/ECP_EDN_15.fasta -> build/lib/ete3/test/ete_evol_data/CladeModelCD copying ete3/test/ete_evol_data/CladeModelCD/ECP_EDN_15.nw -> build/lib/ete3/test/ete_evol_data/CladeModelCD creating build/lib/ete3/test/ete_evol_data/L_example copying ete3/test/ete_evol_data/L_example/alignment_L_measuring_evol.fasta -> build/lib/ete3/test/ete_evol_data/L_example copying ete3/test/ete_evol_data/L_example/measuring_L_tree.nw -> build/lib/ete3/test/ete_evol_data/L_example creating build/lib/ete3/test/ete_evol_data/S_example copying ete3/test/ete_evol_data/S_example/ali.fasta -> build/lib/ete3/test/ete_evol_data/S_example copying ete3/test/ete_evol_data/S_example/tree.nw -> build/lib/ete3/test/ete_evol_data/S_example creating build/lib/ete3/test/ete_evol_data/S_example/paml creating build/lib/ete3/test/ete_evol_data/S_example/paml/M1 copying ete3/test/ete_evol_data/S_example/paml/M1/2NG.dN -> build/lib/ete3/test/ete_evol_data/S_example/paml/M1 copying ete3/test/ete_evol_data/S_example/paml/M1/2NG.dS -> build/lib/ete3/test/ete_evol_data/S_example/paml/M1 copying ete3/test/ete_evol_data/S_example/paml/M1/2NG.t -> build/lib/ete3/test/ete_evol_data/S_example/paml/M1 copying ete3/test/ete_evol_data/S_example/paml/M1/4fold.nuc -> build/lib/ete3/test/ete_evol_data/S_example/paml/M1 copying ete3/test/ete_evol_data/S_example/paml/M1/algn -> build/lib/ete3/test/ete_evol_data/S_example/paml/M1 copying ete3/test/ete_evol_data/S_example/paml/M1/lnf -> build/lib/ete3/test/ete_evol_data/S_example/paml/M1 copying ete3/test/ete_evol_data/S_example/paml/M1/out -> build/lib/ete3/test/ete_evol_data/S_example/paml/M1 copying ete3/test/ete_evol_data/S_example/paml/M1/rst -> build/lib/ete3/test/ete_evol_data/S_example/paml/M1 copying ete3/test/ete_evol_data/S_example/paml/M1/rst1 -> build/lib/ete3/test/ete_evol_data/S_example/paml/M1 copying ete3/test/ete_evol_data/S_example/paml/M1/rub -> build/lib/ete3/test/ete_evol_data/S_example/paml/M1 copying ete3/test/ete_evol_data/S_example/paml/M1/tmp.ctl -> build/lib/ete3/test/ete_evol_data/S_example/paml/M1 copying ete3/test/ete_evol_data/S_example/paml/M1/tree -> build/lib/ete3/test/ete_evol_data/S_example/paml/M1 creating build/lib/ete3/test/ete_evol_data/S_example/paml/M2 copying ete3/test/ete_evol_data/S_example/paml/M2/2NG.dN -> build/lib/ete3/test/ete_evol_data/S_example/paml/M2 copying ete3/test/ete_evol_data/S_example/paml/M2/2NG.dS -> build/lib/ete3/test/ete_evol_data/S_example/paml/M2 copying ete3/test/ete_evol_data/S_example/paml/M2/2NG.t -> build/lib/ete3/test/ete_evol_data/S_example/paml/M2 copying ete3/test/ete_evol_data/S_example/paml/M2/4fold.nuc -> build/lib/ete3/test/ete_evol_data/S_example/paml/M2 copying ete3/test/ete_evol_data/S_example/paml/M2/algn -> build/lib/ete3/test/ete_evol_data/S_example/paml/M2 copying ete3/test/ete_evol_data/S_example/paml/M2/lnf -> build/lib/ete3/test/ete_evol_data/S_example/paml/M2 copying ete3/test/ete_evol_data/S_example/paml/M2/out -> build/lib/ete3/test/ete_evol_data/S_example/paml/M2 copying ete3/test/ete_evol_data/S_example/paml/M2/rst -> build/lib/ete3/test/ete_evol_data/S_example/paml/M2 copying ete3/test/ete_evol_data/S_example/paml/M2/rst1 -> build/lib/ete3/test/ete_evol_data/S_example/paml/M2 copying ete3/test/ete_evol_data/S_example/paml/M2/rub -> build/lib/ete3/test/ete_evol_data/S_example/paml/M2 copying ete3/test/ete_evol_data/S_example/paml/M2/tmp.ctl -> build/lib/ete3/test/ete_evol_data/S_example/paml/M2 copying ete3/test/ete_evol_data/S_example/paml/M2/tree -> build/lib/ete3/test/ete_evol_data/S_example/paml/M2 creating build/lib/ete3/test/ete_evol_data/S_example/paml/bsA copying ete3/test/ete_evol_data/S_example/paml/bsA/2NG.dN -> build/lib/ete3/test/ete_evol_data/S_example/paml/bsA copying ete3/test/ete_evol_data/S_example/paml/bsA/2NG.dS -> build/lib/ete3/test/ete_evol_data/S_example/paml/bsA copying ete3/test/ete_evol_data/S_example/paml/bsA/2NG.t -> build/lib/ete3/test/ete_evol_data/S_example/paml/bsA copying ete3/test/ete_evol_data/S_example/paml/bsA/4fold.nuc -> build/lib/ete3/test/ete_evol_data/S_example/paml/bsA copying ete3/test/ete_evol_data/S_example/paml/bsA/algn -> build/lib/ete3/test/ete_evol_data/S_example/paml/bsA copying ete3/test/ete_evol_data/S_example/paml/bsA/lnf -> build/lib/ete3/test/ete_evol_data/S_example/paml/bsA copying ete3/test/ete_evol_data/S_example/paml/bsA/out -> build/lib/ete3/test/ete_evol_data/S_example/paml/bsA copying ete3/test/ete_evol_data/S_example/paml/bsA/rst -> build/lib/ete3/test/ete_evol_data/S_example/paml/bsA copying ete3/test/ete_evol_data/S_example/paml/bsA/rst1 -> build/lib/ete3/test/ete_evol_data/S_example/paml/bsA copying ete3/test/ete_evol_data/S_example/paml/bsA/rub -> build/lib/ete3/test/ete_evol_data/S_example/paml/bsA copying ete3/test/ete_evol_data/S_example/paml/bsA/tmp.ctl -> build/lib/ete3/test/ete_evol_data/S_example/paml/bsA copying ete3/test/ete_evol_data/S_example/paml/bsA/tree -> build/lib/ete3/test/ete_evol_data/S_example/paml/bsA creating build/lib/ete3/test/ete_evol_data/S_example/paml/bsA1 copying ete3/test/ete_evol_data/S_example/paml/bsA1/2NG.dN -> build/lib/ete3/test/ete_evol_data/S_example/paml/bsA1 copying ete3/test/ete_evol_data/S_example/paml/bsA1/2NG.dS -> build/lib/ete3/test/ete_evol_data/S_example/paml/bsA1 copying ete3/test/ete_evol_data/S_example/paml/bsA1/2NG.t -> build/lib/ete3/test/ete_evol_data/S_example/paml/bsA1 copying ete3/test/ete_evol_data/S_example/paml/bsA1/4fold.nuc -> build/lib/ete3/test/ete_evol_data/S_example/paml/bsA1 copying ete3/test/ete_evol_data/S_example/paml/bsA1/algn -> build/lib/ete3/test/ete_evol_data/S_example/paml/bsA1 copying ete3/test/ete_evol_data/S_example/paml/bsA1/lnf -> build/lib/ete3/test/ete_evol_data/S_example/paml/bsA1 copying ete3/test/ete_evol_data/S_example/paml/bsA1/out -> build/lib/ete3/test/ete_evol_data/S_example/paml/bsA1 copying ete3/test/ete_evol_data/S_example/paml/bsA1/rst -> build/lib/ete3/test/ete_evol_data/S_example/paml/bsA1 copying ete3/test/ete_evol_data/S_example/paml/bsA1/rst1 -> build/lib/ete3/test/ete_evol_data/S_example/paml/bsA1 copying ete3/test/ete_evol_data/S_example/paml/bsA1/rub -> build/lib/ete3/test/ete_evol_data/S_example/paml/bsA1 copying ete3/test/ete_evol_data/S_example/paml/bsA1/tmp.ctl -> build/lib/ete3/test/ete_evol_data/S_example/paml/bsA1 copying ete3/test/ete_evol_data/S_example/paml/bsA1/tree -> build/lib/ete3/test/ete_evol_data/S_example/paml/bsA1 creating build/lib/ete3/test/ete_evol_data/S_example/paml/fb copying ete3/test/ete_evol_data/S_example/paml/fb/2NG.dN -> build/lib/ete3/test/ete_evol_data/S_example/paml/fb copying ete3/test/ete_evol_data/S_example/paml/fb/2NG.dS -> build/lib/ete3/test/ete_evol_data/S_example/paml/fb copying ete3/test/ete_evol_data/S_example/paml/fb/2NG.t -> build/lib/ete3/test/ete_evol_data/S_example/paml/fb copying ete3/test/ete_evol_data/S_example/paml/fb/4fold.nuc -> build/lib/ete3/test/ete_evol_data/S_example/paml/fb copying ete3/test/ete_evol_data/S_example/paml/fb/algn -> build/lib/ete3/test/ete_evol_data/S_example/paml/fb copying ete3/test/ete_evol_data/S_example/paml/fb/lnf -> build/lib/ete3/test/ete_evol_data/S_example/paml/fb copying ete3/test/ete_evol_data/S_example/paml/fb/out -> build/lib/ete3/test/ete_evol_data/S_example/paml/fb copying ete3/test/ete_evol_data/S_example/paml/fb/rst -> build/lib/ete3/test/ete_evol_data/S_example/paml/fb copying ete3/test/ete_evol_data/S_example/paml/fb/rst1 -> build/lib/ete3/test/ete_evol_data/S_example/paml/fb copying ete3/test/ete_evol_data/S_example/paml/fb/rub -> build/lib/ete3/test/ete_evol_data/S_example/paml/fb copying ete3/test/ete_evol_data/S_example/paml/fb/tmp.ctl -> build/lib/ete3/test/ete_evol_data/S_example/paml/fb copying ete3/test/ete_evol_data/S_example/paml/fb/tree -> build/lib/ete3/test/ete_evol_data/S_example/paml/fb creating build/lib/ete3/test/ete_evol_data/XS_example copying ete3/test/ete_evol_data/XS_example/ali.fasta -> build/lib/ete3/test/ete_evol_data/XS_example copying ete3/test/ete_evol_data/XS_example/tree.nw -> build/lib/ete3/test/ete_evol_data/XS_example creating build/lib/ete3/test/ete_evol_data/protamine creating build/lib/ete3/test/ete_evol_data/protamine/PRM1 copying ete3/test/ete_evol_data/protamine/PRM1/alignments.fasta_ali -> build/lib/ete3/test/ete_evol_data/protamine/PRM1 copying ete3/test/ete_evol_data/protamine/PRM1/tree.nw -> build/lib/ete3/test/ete_evol_data/protamine/PRM1 creating build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml creating build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M0 copying ete3/test/ete_evol_data/protamine/PRM1/paml/M0/2NG.dN -> build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M0 copying ete3/test/ete_evol_data/protamine/PRM1/paml/M0/2NG.dS -> build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M0 copying ete3/test/ete_evol_data/protamine/PRM1/paml/M0/2NG.t -> build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M0 copying ete3/test/ete_evol_data/protamine/PRM1/paml/M0/4fold.nuc -> build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M0 copying ete3/test/ete_evol_data/protamine/PRM1/paml/M0/algn -> build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M0 copying ete3/test/ete_evol_data/protamine/PRM1/paml/M0/lnf -> build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M0 copying ete3/test/ete_evol_data/protamine/PRM1/paml/M0/out -> build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M0 copying ete3/test/ete_evol_data/protamine/PRM1/paml/M0/rst -> build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M0 copying ete3/test/ete_evol_data/protamine/PRM1/paml/M0/rst1 -> build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M0 copying ete3/test/ete_evol_data/protamine/PRM1/paml/M0/rub -> build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M0 copying ete3/test/ete_evol_data/protamine/PRM1/paml/M0/tmp.ctl -> build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M0 copying ete3/test/ete_evol_data/protamine/PRM1/paml/M0/tree -> build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M0 creating build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M1 copying ete3/test/ete_evol_data/protamine/PRM1/paml/M1/2NG.dN -> build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M1 copying ete3/test/ete_evol_data/protamine/PRM1/paml/M1/2NG.dS -> build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M1 copying ete3/test/ete_evol_data/protamine/PRM1/paml/M1/2NG.t -> build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M1 copying ete3/test/ete_evol_data/protamine/PRM1/paml/M1/4fold.nuc -> build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M1 copying ete3/test/ete_evol_data/protamine/PRM1/paml/M1/M1.out -> build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M1 copying ete3/test/ete_evol_data/protamine/PRM1/paml/M1/algn -> build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M1 copying ete3/test/ete_evol_data/protamine/PRM1/paml/M1/lnf -> build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M1 copying ete3/test/ete_evol_data/protamine/PRM1/paml/M1/rst -> build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M1 copying ete3/test/ete_evol_data/protamine/PRM1/paml/M1/rst1 -> build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M1 copying ete3/test/ete_evol_data/protamine/PRM1/paml/M1/rub -> build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M1 copying ete3/test/ete_evol_data/protamine/PRM1/paml/M1/tmp.ctl -> build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M1 copying ete3/test/ete_evol_data/protamine/PRM1/paml/M1/tree -> build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M1 creating build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M2 copying ete3/test/ete_evol_data/protamine/PRM1/paml/M2/2NG.dN -> build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M2 copying ete3/test/ete_evol_data/protamine/PRM1/paml/M2/2NG.dS -> build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M2 copying ete3/test/ete_evol_data/protamine/PRM1/paml/M2/2NG.t -> build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M2 copying ete3/test/ete_evol_data/protamine/PRM1/paml/M2/4fold.nuc -> build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M2 copying ete3/test/ete_evol_data/protamine/PRM1/paml/M2/M2.out -> build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M2 copying ete3/test/ete_evol_data/protamine/PRM1/paml/M2/algn -> build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M2 copying ete3/test/ete_evol_data/protamine/PRM1/paml/M2/lnf -> build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M2 copying ete3/test/ete_evol_data/protamine/PRM1/paml/M2/rst -> build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M2 copying ete3/test/ete_evol_data/protamine/PRM1/paml/M2/rst1 -> build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M2 copying ete3/test/ete_evol_data/protamine/PRM1/paml/M2/rub -> build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M2 copying ete3/test/ete_evol_data/protamine/PRM1/paml/M2/tmp.ctl -> build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M2 copying ete3/test/ete_evol_data/protamine/PRM1/paml/M2/tree -> build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M2 creating build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M7 copying ete3/test/ete_evol_data/protamine/PRM1/paml/M7/2NG.dN -> build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M7 copying ete3/test/ete_evol_data/protamine/PRM1/paml/M7/2NG.dS -> build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M7 copying ete3/test/ete_evol_data/protamine/PRM1/paml/M7/2NG.t -> build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M7 copying ete3/test/ete_evol_data/protamine/PRM1/paml/M7/4fold.nuc -> build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M7 copying ete3/test/ete_evol_data/protamine/PRM1/paml/M7/M7.out -> build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M7 copying ete3/test/ete_evol_data/protamine/PRM1/paml/M7/algn -> build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M7 copying ete3/test/ete_evol_data/protamine/PRM1/paml/M7/lnf -> build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M7 copying ete3/test/ete_evol_data/protamine/PRM1/paml/M7/rst -> build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M7 copying ete3/test/ete_evol_data/protamine/PRM1/paml/M7/rst1 -> build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M7 copying ete3/test/ete_evol_data/protamine/PRM1/paml/M7/rub -> build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M7 copying ete3/test/ete_evol_data/protamine/PRM1/paml/M7/tmp.ctl -> build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M7 copying ete3/test/ete_evol_data/protamine/PRM1/paml/M7/tree -> build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M7 creating build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M8 copying ete3/test/ete_evol_data/protamine/PRM1/paml/M8/2NG.dN -> build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M8 copying ete3/test/ete_evol_data/protamine/PRM1/paml/M8/2NG.dS -> build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M8 copying ete3/test/ete_evol_data/protamine/PRM1/paml/M8/2NG.t -> build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M8 copying ete3/test/ete_evol_data/protamine/PRM1/paml/M8/4fold.nuc -> build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M8 copying ete3/test/ete_evol_data/protamine/PRM1/paml/M8/M8.out -> build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M8 copying ete3/test/ete_evol_data/protamine/PRM1/paml/M8/algn -> build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M8 copying ete3/test/ete_evol_data/protamine/PRM1/paml/M8/lnf -> build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M8 copying ete3/test/ete_evol_data/protamine/PRM1/paml/M8/rst -> build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M8 copying ete3/test/ete_evol_data/protamine/PRM1/paml/M8/rst1 -> build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M8 copying ete3/test/ete_evol_data/protamine/PRM1/paml/M8/rub -> build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M8 copying ete3/test/ete_evol_data/protamine/PRM1/paml/M8/tmp.ctl -> build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M8 copying ete3/test/ete_evol_data/protamine/PRM1/paml/M8/tree -> build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M8 creating build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/fb copying ete3/test/ete_evol_data/protamine/PRM1/paml/fb/2NG.dN -> build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/fb copying ete3/test/ete_evol_data/protamine/PRM1/paml/fb/2NG.dS -> build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/fb copying ete3/test/ete_evol_data/protamine/PRM1/paml/fb/2NG.t -> build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/fb copying ete3/test/ete_evol_data/protamine/PRM1/paml/fb/4fold.nuc -> build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/fb copying ete3/test/ete_evol_data/protamine/PRM1/paml/fb/algn -> build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/fb copying ete3/test/ete_evol_data/protamine/PRM1/paml/fb/fb.out -> build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/fb copying ete3/test/ete_evol_data/protamine/PRM1/paml/fb/lnf -> build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/fb copying ete3/test/ete_evol_data/protamine/PRM1/paml/fb/rst.fb -> build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/fb copying ete3/test/ete_evol_data/protamine/PRM1/paml/fb/rst1 -> build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/fb copying ete3/test/ete_evol_data/protamine/PRM1/paml/fb/rub -> build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/fb copying ete3/test/ete_evol_data/protamine/PRM1/paml/fb/tmp.ctl -> build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/fb copying ete3/test/ete_evol_data/protamine/PRM1/paml/fb/tree -> build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/fb creating build/lib/ete3/test/ete_evol_data/protamine/PRM1/slr copying ete3/test/ete_evol_data/protamine/PRM1/slr/2NG.dN -> build/lib/ete3/test/ete_evol_data/protamine/PRM1/slr copying ete3/test/ete_evol_data/protamine/PRM1/slr/2NG.dS -> build/lib/ete3/test/ete_evol_data/protamine/PRM1/slr copying ete3/test/ete_evol_data/protamine/PRM1/slr/2NG.t -> build/lib/ete3/test/ete_evol_data/protamine/PRM1/slr copying ete3/test/ete_evol_data/protamine/PRM1/slr/4fold.nuc -> build/lib/ete3/test/ete_evol_data/protamine/PRM1/slr copying ete3/test/ete_evol_data/protamine/PRM1/slr/algn -> build/lib/ete3/test/ete_evol_data/protamine/PRM1/slr copying ete3/test/ete_evol_data/protamine/PRM1/slr/fb.out -> build/lib/ete3/test/ete_evol_data/protamine/PRM1/slr copying ete3/test/ete_evol_data/protamine/PRM1/slr/lnf -> build/lib/ete3/test/ete_evol_data/protamine/PRM1/slr copying ete3/test/ete_evol_data/protamine/PRM1/slr/rst.fb -> build/lib/ete3/test/ete_evol_data/protamine/PRM1/slr copying ete3/test/ete_evol_data/protamine/PRM1/slr/rst1 -> build/lib/ete3/test/ete_evol_data/protamine/PRM1/slr copying ete3/test/ete_evol_data/protamine/PRM1/slr/rub -> build/lib/ete3/test/ete_evol_data/protamine/PRM1/slr copying ete3/test/ete_evol_data/protamine/PRM1/slr/slr.ctl -> build/lib/ete3/test/ete_evol_data/protamine/PRM1/slr copying ete3/test/ete_evol_data/protamine/PRM1/slr/tmp.ctl -> build/lib/ete3/test/ete_evol_data/protamine/PRM1/slr copying ete3/test/ete_evol_data/protamine/PRM1/slr/tree -> build/lib/ete3/test/ete_evol_data/protamine/PRM1/slr copying ete3/test/ete_evol_data/protamine/PRM1/slr/tree.slr -> build/lib/ete3/test/ete_evol_data/protamine/PRM1/slr creating build/lib/ete3/test/test_ete_build copying ete3/test/test_ete_build/NUP62.aa.fa -> build/lib/ete3/test/test_ete_build copying ete3/test/test_ete_build/NUP62.nt.fa -> build/lib/ete3/test/test_ete_build copying ete3/test/test_ete_build/P53.alg.fa -> build/lib/ete3/test/test_ete_build copying ete3/test/test_ete_build/P53.fa -> build/lib/ete3/test/test_ete_build copying ete3/test/test_ete_build/__init__.py -> build/lib/ete3/test/test_ete_build copying ete3/test/test_ete_build/__main__.py -> build/lib/ete3/test/test_ete_build copying ete3/test/test_ete_build/cog_seqs.fa -> build/lib/ete3/test/test_ete_build copying ete3/test/test_ete_build/cog_seqs.nt.fa -> build/lib/ete3/test/test_ete_build copying ete3/test/test_ete_build/fake_alg1.fa -> build/lib/ete3/test/test_ete_build copying ete3/test/test_ete_build/fake_alg1.nt.fa -> build/lib/ete3/test/test_ete_build copying ete3/test/test_ete_build/fake_alg2.fa -> build/lib/ete3/test/test_ete_build copying ete3/test/test_ete_build/fake_alg2.nt.fa -> build/lib/ete3/test/test_ete_build copying ete3/test/test_ete_build/fake_alg3.fa -> build/lib/ete3/test/test_ete_build copying ete3/test/test_ete_build/fake_alg3.nt.fa -> build/lib/ete3/test/test_ete_build copying ete3/test/test_ete_build/fake_cogs.tsv -> build/lib/ete3/test/test_ete_build copying ete3/test/test_ete_build/test_genetree.py -> build/lib/ete3/test/test_ete_build copying ete3/test/test_ete_build/test_manual_alg.py -> build/lib/ete3/test/test_ete_build copying ete3/test/test_ete_build/test_modeltest.py -> build/lib/ete3/test/test_ete_build copying ete3/test/test_ete_build/test_sptree.py -> build/lib/ete3/test/test_ete_build creating build/lib/ete3/test/test_issue258 copying ete3/test/test_issue258/issue258.py -> build/lib/ete3/test/test_issue258 creating build/lib/ete3/test/test_treeview copying ete3/test/test_treeview/__init__.py -> build/lib/ete3/test/test_treeview copying ete3/test/test_treeview/barchart_and_piechart_faces.py -> build/lib/ete3/test/test_treeview copying ete3/test/test_treeview/barcharts.png -> build/lib/ete3/test/test_treeview copying ete3/test/test_treeview/bubble_map.png -> build/lib/ete3/test/test_treeview copying ete3/test/test_treeview/bubble_map.py -> build/lib/ete3/test/test_treeview copying ete3/test/test_treeview/chimp.png -> build/lib/ete3/test/test_treeview copying ete3/test/test_treeview/dog.png -> build/lib/ete3/test/test_treeview copying ete3/test/test_treeview/face_grid.py -> build/lib/ete3/test/test_treeview copying ete3/test/test_treeview/face_positions.py -> build/lib/ete3/test/test_treeview copying ete3/test/test_treeview/face_rotation.py -> build/lib/ete3/test/test_treeview copying ete3/test/test_treeview/fish.png -> build/lib/ete3/test/test_treeview copying ete3/test/test_treeview/float_piechart.png -> build/lib/ete3/test/test_treeview copying ete3/test/test_treeview/floating_piecharts.py -> build/lib/ete3/test/test_treeview copying ete3/test/test_treeview/fly.png -> build/lib/ete3/test/test_treeview copying ete3/test/test_treeview/human.png -> build/lib/ete3/test/test_treeview copying ete3/test/test_treeview/img_faces.png -> build/lib/ete3/test/test_treeview copying ete3/test/test_treeview/img_faces.py -> build/lib/ete3/test/test_treeview copying ete3/test/test_treeview/item_faces.png -> build/lib/ete3/test/test_treeview copying ete3/test/test_treeview/item_faces.py -> build/lib/ete3/test/test_treeview copying ete3/test/test_treeview/motifs.png -> build/lib/ete3/test/test_treeview copying ete3/test/test_treeview/mouse.png -> build/lib/ete3/test/test_treeview copying ete3/test/test_treeview/new_seq_face.py -> build/lib/ete3/test/test_treeview copying ete3/test/test_treeview/node_background.png -> build/lib/ete3/test/test_treeview copying ete3/test/test_treeview/node_background.py -> build/lib/ete3/test/test_treeview copying ete3/test/test_treeview/node_style.png -> build/lib/ete3/test/test_treeview copying ete3/test/test_treeview/node_style.py -> build/lib/ete3/test/test_treeview copying ete3/test/test_treeview/phylotree_visualization.py -> build/lib/ete3/test/test_treeview copying ete3/test/test_treeview/random_draw.py -> build/lib/ete3/test/test_treeview copying ete3/test/test_treeview/rotated_faces.png -> build/lib/ete3/test/test_treeview copying ete3/test/test_treeview/seq_motif_faces.png -> build/lib/ete3/test/test_treeview copying ete3/test/test_treeview/seq_motif_faces.py -> build/lib/ete3/test/test_treeview copying ete3/test/test_treeview/seqmotif.png -> build/lib/ete3/test/test_treeview copying ete3/test/test_treeview/test_all_treeview.py -> build/lib/ete3/test/test_treeview copying ete3/test/test_treeview/tree_faces.png -> build/lib/ete3/test/test_treeview copying ete3/test/test_treeview/tree_faces.py -> build/lib/ete3/test/test_treeview creating build/lib/ete3/tools copying ete3/tools/__init__.py -> build/lib/ete3/tools copying ete3/tools/common.py -> build/lib/ete3/tools copying ete3/tools/ete.py -> build/lib/ete3/tools copying ete3/tools/ete_annotate.py -> build/lib/ete3/tools copying ete3/tools/ete_build.cfg -> build/lib/ete3/tools copying ete3/tools/ete_build.py -> build/lib/ete3/tools copying ete3/tools/ete_compare.py -> build/lib/ete3/tools copying ete3/tools/ete_evol.py -> build/lib/ete3/tools copying ete3/tools/ete_expand.py -> build/lib/ete3/tools copying ete3/tools/ete_extract.py -> build/lib/ete3/tools copying ete3/tools/ete_generate.py -> build/lib/ete3/tools copying ete3/tools/ete_maptrees.py -> build/lib/ete3/tools copying ete3/tools/ete_mod.py -> build/lib/ete3/tools copying ete3/tools/ete_ncbiquery.py -> build/lib/ete3/tools copying ete3/tools/ete_split.py -> build/lib/ete3/tools copying ete3/tools/ete_upgrade_tools.py -> build/lib/ete3/tools copying ete3/tools/ete_view.py -> build/lib/ete3/tools copying ete3/tools/utils.py -> build/lib/ete3/tools creating build/lib/ete3/tools/ete_build_lib copying ete3/tools/ete_build_lib/__init__.py -> build/lib/ete3/tools/ete_build_lib copying ete3/tools/ete_build_lib/apps.py -> build/lib/ete3/tools/ete_build_lib copying ete3/tools/ete_build_lib/configcheck.py -> build/lib/ete3/tools/ete_build_lib copying ete3/tools/ete_build_lib/configobj.py -> build/lib/ete3/tools/ete_build_lib copying ete3/tools/ete_build_lib/curses_gui.py -> build/lib/ete3/tools/ete_build_lib copying ete3/tools/ete_build_lib/db.py -> build/lib/ete3/tools/ete_build_lib copying ete3/tools/ete_build_lib/errors.py -> build/lib/ete3/tools/ete_build_lib copying ete3/tools/ete_build_lib/getch.py -> build/lib/ete3/tools/ete_build_lib copying ete3/tools/ete_build_lib/interface.py -> build/lib/ete3/tools/ete_build_lib copying ete3/tools/ete_build_lib/logger.py -> build/lib/ete3/tools/ete_build_lib copying ete3/tools/ete_build_lib/master_job.py -> build/lib/ete3/tools/ete_build_lib copying ete3/tools/ete_build_lib/master_task.py -> build/lib/ete3/tools/ete_build_lib copying ete3/tools/ete_build_lib/ordereddict.py -> build/lib/ete3/tools/ete_build_lib copying ete3/tools/ete_build_lib/scheduler.py -> build/lib/ete3/tools/ete_build_lib copying ete3/tools/ete_build_lib/seqio.py -> build/lib/ete3/tools/ete_build_lib copying ete3/tools/ete_build_lib/sge.py -> build/lib/ete3/tools/ete_build_lib copying ete3/tools/ete_build_lib/utils.py -> build/lib/ete3/tools/ete_build_lib copying ete3/tools/ete_build_lib/validate.py -> build/lib/ete3/tools/ete_build_lib copying ete3/tools/ete_build_lib/visualize.py -> build/lib/ete3/tools/ete_build_lib creating build/lib/ete3/tools/ete_build_lib/task copying ete3/tools/ete_build_lib/task/__init__.py -> build/lib/ete3/tools/ete_build_lib/task copying ete3/tools/ete_build_lib/task/clustalo.py -> build/lib/ete3/tools/ete_build_lib/task copying ete3/tools/ete_build_lib/task/cog_creator.py -> build/lib/ete3/tools/ete_build_lib/task copying ete3/tools/ete_build_lib/task/cog_selector.py -> build/lib/ete3/tools/ete_build_lib/task copying ete3/tools/ete_build_lib/task/concat_alg.py -> build/lib/ete3/tools/ete_build_lib/task copying ete3/tools/ete_build_lib/task/dialigntx.py -> build/lib/ete3/tools/ete_build_lib/task copying ete3/tools/ete_build_lib/task/dummyalg.py -> build/lib/ete3/tools/ete_build_lib/task copying ete3/tools/ete_build_lib/task/dummytree.py -> build/lib/ete3/tools/ete_build_lib/task copying ete3/tools/ete_build_lib/task/fasttree.py -> build/lib/ete3/tools/ete_build_lib/task copying ete3/tools/ete_build_lib/task/iqtree.py -> build/lib/ete3/tools/ete_build_lib/task copying ete3/tools/ete_build_lib/task/jmodeltest.py -> build/lib/ete3/tools/ete_build_lib/task copying ete3/tools/ete_build_lib/task/mafft.py -> build/lib/ete3/tools/ete_build_lib/task copying ete3/tools/ete_build_lib/task/merger.py -> build/lib/ete3/tools/ete_build_lib/task copying ete3/tools/ete_build_lib/task/meta_aligner.py -> build/lib/ete3/tools/ete_build_lib/task copying ete3/tools/ete_build_lib/task/msf.py -> build/lib/ete3/tools/ete_build_lib/task copying ete3/tools/ete_build_lib/task/muscle.py -> build/lib/ete3/tools/ete_build_lib/task copying ete3/tools/ete_build_lib/task/phyml.py -> build/lib/ete3/tools/ete_build_lib/task copying ete3/tools/ete_build_lib/task/pmodeltest.py -> build/lib/ete3/tools/ete_build_lib/task copying ete3/tools/ete_build_lib/task/prottest.py -> build/lib/ete3/tools/ete_build_lib/task copying ete3/tools/ete_build_lib/task/prottest2.py -> build/lib/ete3/tools/ete_build_lib/task copying ete3/tools/ete_build_lib/task/raxml.py -> build/lib/ete3/tools/ete_build_lib/task copying ete3/tools/ete_build_lib/task/tcoffee.py -> build/lib/ete3/tools/ete_build_lib/task copying ete3/tools/ete_build_lib/task/trimal.py -> build/lib/ete3/tools/ete_build_lib/task copying ete3/tools/ete_build_lib/task/uhire.py -> build/lib/ete3/tools/ete_build_lib/task creating build/lib/ete3/tools/ete_build_lib/workflow copying ete3/tools/ete_build_lib/workflow/__init__.py -> build/lib/ete3/tools/ete_build_lib/workflow copying ete3/tools/ete_build_lib/workflow/common.py -> build/lib/ete3/tools/ete_build_lib/workflow copying ete3/tools/ete_build_lib/workflow/genetree.py -> build/lib/ete3/tools/ete_build_lib/workflow copying ete3/tools/ete_build_lib/workflow/supermatrix.py -> build/lib/ete3/tools/ete_build_lib/workflow creating build/lib/ete3/treeview copying ete3/treeview/__init__.py -> build/lib/ete3/treeview copying ete3/treeview/_about.py -> build/lib/ete3/treeview copying ete3/treeview/_mainwindow.py -> build/lib/ete3/treeview copying ete3/treeview/_open_newick.py -> build/lib/ete3/treeview copying ete3/treeview/_search_dialog.py -> build/lib/ete3/treeview copying ete3/treeview/_show_codeml.py -> build/lib/ete3/treeview copying ete3/treeview/_show_newick.py -> build/lib/ete3/treeview copying ete3/treeview/about.ui -> build/lib/ete3/treeview copying ete3/treeview/clean_search.png -> build/lib/ete3/treeview copying ete3/treeview/drawer.py -> build/lib/ete3/treeview copying ete3/treeview/ete_icon.png -> build/lib/ete3/treeview copying ete3/treeview/ete_logo.png -> build/lib/ete3/treeview copying ete3/treeview/ete_qt4app.ui -> build/lib/ete3/treeview copying ete3/treeview/ete_resources.qrc -> build/lib/ete3/treeview copying ete3/treeview/ete_resources_rc.py -> build/lib/ete3/treeview copying ete3/treeview/export_pdf.png -> build/lib/ete3/treeview copying ete3/treeview/faces.py -> build/lib/ete3/treeview copying ete3/treeview/fileopen.png -> build/lib/ete3/treeview copying ete3/treeview/filesave.png -> build/lib/ete3/treeview copying ete3/treeview/fit_region.png -> build/lib/ete3/treeview copying ete3/treeview/fit_tree.png -> build/lib/ete3/treeview copying ete3/treeview/force_topo.png -> build/lib/ete3/treeview copying ete3/treeview/image_properties.ui -> build/lib/ete3/treeview copying ete3/treeview/layouts.py -> build/lib/ete3/treeview copying ete3/treeview/main.py -> build/lib/ete3/treeview copying ete3/treeview/node_gui_actions.py -> build/lib/ete3/treeview copying ete3/treeview/open_newick.ui -> build/lib/ete3/treeview copying ete3/treeview/qt.py -> build/lib/ete3/treeview copying ete3/treeview/qt4_circular_render.py -> build/lib/ete3/treeview copying ete3/treeview/qt4_compile_resources.sh -> build/lib/ete3/treeview copying ete3/treeview/qt4_face_render.py -> build/lib/ete3/treeview copying ete3/treeview/qt4_gui.py -> build/lib/ete3/treeview copying ete3/treeview/qt4_rect_render.py -> build/lib/ete3/treeview copying ete3/treeview/qt4_render.py -> build/lib/ete3/treeview copying ete3/treeview/search.png -> build/lib/ete3/treeview copying ete3/treeview/search_dialog.ui -> build/lib/ete3/treeview copying ete3/treeview/show_dist.png -> build/lib/ete3/treeview copying ete3/treeview/show_names.png -> build/lib/ete3/treeview copying ete3/treeview/show_newick.png -> build/lib/ete3/treeview copying ete3/treeview/show_newick.ui -> build/lib/ete3/treeview copying ete3/treeview/show_support.png -> build/lib/ete3/treeview copying ete3/treeview/svg_colors.py -> build/lib/ete3/treeview copying ete3/treeview/templates.py -> build/lib/ete3/treeview copying ete3/treeview/x_expand.png -> build/lib/ete3/treeview copying ete3/treeview/x_reduce.png -> build/lib/ete3/treeview copying ete3/treeview/y_expand.png -> build/lib/ete3/treeview copying ete3/treeview/y_reduce.png -> build/lib/ete3/treeview copying ete3/treeview/zoom_in.png -> build/lib/ete3/treeview copying ete3/treeview/zoom_out.png -> build/lib/ete3/treeview creating build/lib/ete3/webplugin copying ete3/webplugin/__init__.py -> build/lib/ete3/webplugin copying ete3/webplugin/webapp.py -> build/lib/ete3/webplugin =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> py311-ete3-3.1.3_3 depends on package: py311-numpy>=1.16,1<1.27,1 - found ===> py311-ete3-3.1.3_3 depends on package: py311-lxml>0 - found ===> py311-ete3-3.1.3_3 depends on package: py311-six>0 - found ===> py311-ete3-3.1.3_3 depends on file: /usr/local/bin/python3.11 - found ===> py311-ete3-3.1.3_3 depends on package: py311-qt5-pyqt>=5.15.11 - found =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=nobody UID=65534 GID=65534 ===> Staging for py311-ete3-3.1.3_3 ===> Generating temporary packing list running install /usr/local/lib/python3.11/site-packages/setuptools/command/install.py:34: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools. warnings.warn( running build running build_py running egg_info writing ete3.egg-info/PKG-INFO writing dependency_links to ete3.egg-info/dependency_links.txt writing entry points to ete3.egg-info/entry_points.txt writing top-level names to ete3.egg-info/top_level.txt reading manifest file 'ete3.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no directories found matching 'doc' warning: no previously-included files matching '*.pyc' found anywhere in distribution warning: no previously-included files matching '*.pyo' found anywhere in distribution warning: no previously-included files matching '~*' found anywhere in distribution warning: no previously-included files matching '*~' found anywhere in distribution warning: manifest_maker: MANIFEST.in, line 17: 'global-exclude' expects ... warning: no previously-included files matching '*.gz' found anywhere in distribution adding license file 'LICENSE' writing manifest file 'ete3.egg-info/SOURCES.txt' /usr/local/lib/python3.11/site-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning: Installing 'ete3.clustering' as data is deprecated, please list it in `packages`. !! ############################ # Package would be ignored # ############################ Python recognizes 'ete3.clustering' as an importable package, but it is not listed in the `packages` configuration of setuptools. 'ete3.clustering' has been automatically added to the distribution only because it may contain data files, but this behavior is likely to change in future versions of setuptools (and therefore is considered deprecated). Please make sure that 'ete3.clustering' is included as a package by using the `packages` configuration field or the proper discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" and "data files" on setuptools documentation page. !! check.warn(importable) /usr/local/lib/python3.11/site-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning: Installing 'ete3.coretype' as data is deprecated, please list it in `packages`. !! ############################ # Package would be ignored # ############################ Python recognizes 'ete3.coretype' as an importable package, but it is not listed in the `packages` configuration of setuptools. 'ete3.coretype' has been automatically added to the distribution only because it may contain data files, but this behavior is likely to change in future versions of setuptools (and therefore is considered deprecated). Please make sure that 'ete3.coretype' is included as a package by using the `packages` configuration field or the proper discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" and "data files" on setuptools documentation page. !! check.warn(importable) /usr/local/lib/python3.11/site-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning: Installing 'ete3.evol' as data is deprecated, please list it in `packages`. !! ############################ # Package would be ignored # ############################ Python recognizes 'ete3.evol' as an importable package, but it is not listed in the `packages` configuration of setuptools. 'ete3.evol' has been automatically added to the distribution only because it may contain data files, but this behavior is likely to change in future versions of setuptools (and therefore is considered deprecated). Please make sure that 'ete3.evol' is included as a package by using the `packages` configuration field or the proper discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" and "data files" on setuptools documentation page. !! check.warn(importable) /usr/local/lib/python3.11/site-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning: Installing 'ete3.evol.parser' as data is deprecated, please list it in `packages`. !! ############################ # Package would be ignored # ############################ Python recognizes 'ete3.evol.parser' as an importable package, but it is not listed in the `packages` configuration of setuptools. 'ete3.evol.parser' has been automatically added to the distribution only because it may contain data files, but this behavior is likely to change in future versions of setuptools (and therefore is considered deprecated). Please make sure that 'ete3.evol.parser' is included as a package by using the `packages` configuration field or the proper discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" and "data files" on setuptools documentation page. !! check.warn(importable) /usr/local/lib/python3.11/site-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning: Installing 'ete3.ncbi_taxonomy' as data is deprecated, please list it in `packages`. !! ############################ # Package would be ignored # ############################ Python recognizes 'ete3.ncbi_taxonomy' as an importable package, but it is not listed in the `packages` configuration of setuptools. 'ete3.ncbi_taxonomy' has been automatically added to the distribution only because it may contain data files, but this behavior is likely to change in future versions of setuptools (and therefore is considered deprecated). Please make sure that 'ete3.ncbi_taxonomy' is included as a package by using the `packages` configuration field or the proper discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" and "data files" on setuptools documentation page. !! check.warn(importable) /usr/local/lib/python3.11/site-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning: Installing 'ete3.nexml' as data is deprecated, please list it in `packages`. !! ############################ # Package would be ignored # ############################ Python recognizes 'ete3.nexml' as an importable package, but it is not listed in the `packages` configuration of setuptools. 'ete3.nexml' has been automatically added to the distribution only because it may contain data files, but this behavior is likely to change in future versions of setuptools (and therefore is considered deprecated). Please make sure that 'ete3.nexml' is included as a package by using the `packages` configuration field or the proper discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" and "data files" on setuptools documentation page. !! check.warn(importable) /usr/local/lib/python3.11/site-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning: Installing 'ete3.orthoxml' as data is deprecated, please list it in `packages`. !! ############################ # Package would be ignored # ############################ Python recognizes 'ete3.orthoxml' as an importable package, but it is not listed in the `packages` configuration of setuptools. 'ete3.orthoxml' has been automatically added to the distribution only because it may contain data files, but this behavior is likely to change in future versions of setuptools (and therefore is considered deprecated). Please make sure that 'ete3.orthoxml' is included as a package by using the `packages` configuration field or the proper discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" and "data files" on setuptools documentation page. !! check.warn(importable) /usr/local/lib/python3.11/site-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning: Installing 'ete3.parser' as data is deprecated, please list it in `packages`. !! ############################ # Package would be ignored # ############################ Python recognizes 'ete3.parser' as an importable package, but it is not listed in the `packages` configuration of setuptools. 'ete3.parser' has been automatically added to the distribution only because it may contain data files, but this behavior is likely to change in future versions of setuptools (and therefore is considered deprecated). Please make sure that 'ete3.parser' is included as a package by using the `packages` configuration field or the proper discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" and "data files" on setuptools documentation page. !! check.warn(importable) /usr/local/lib/python3.11/site-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning: Installing 'ete3.phylo' as data is deprecated, please list it in `packages`. !! ############################ # Package would be ignored # ############################ Python recognizes 'ete3.phylo' as an importable package, but it is not listed in the `packages` configuration of setuptools. 'ete3.phylo' has been automatically added to the distribution only because it may contain data files, but this behavior is likely to change in future versions of setuptools (and therefore is considered deprecated). Please make sure that 'ete3.phylo' is included as a package by using the `packages` configuration field or the proper discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" and "data files" on setuptools documentation page. !! check.warn(importable) /usr/local/lib/python3.11/site-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning: Installing 'ete3.phylomedb' as data is deprecated, please list it in `packages`. !! ############################ # Package would be ignored # ############################ Python recognizes 'ete3.phylomedb' as an importable package, but it is not listed in the `packages` configuration of setuptools. 'ete3.phylomedb' has been automatically added to the distribution only because it may contain data files, but this behavior is likely to change in future versions of setuptools (and therefore is considered deprecated). Please make sure that 'ete3.phylomedb' is included as a package by using the `packages` configuration field or the proper discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" and "data files" on setuptools documentation page. !! check.warn(importable) /usr/local/lib/python3.11/site-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning: Installing 'ete3.phyloxml' as data is deprecated, please list it in `packages`. !! ############################ # Package would be ignored # ############################ Python recognizes 'ete3.phyloxml' as an importable package, but it is not listed in the `packages` configuration of setuptools. 'ete3.phyloxml' has been automatically added to the distribution only because it may contain data files, but this behavior is likely to change in future versions of setuptools (and therefore is considered deprecated). Please make sure that 'ete3.phyloxml' is included as a package by using the `packages` configuration field or the proper discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" and "data files" on setuptools documentation page. !! check.warn(importable) /usr/local/lib/python3.11/site-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning: Installing 'ete3.test' as data is deprecated, please list it in `packages`. !! ############################ # Package would be ignored # ############################ Python recognizes 'ete3.test' as an importable package, but it is not listed in the `packages` configuration of setuptools. 'ete3.test' has been automatically added to the distribution only because it may contain data files, but this behavior is likely to change in future versions of setuptools (and therefore is considered deprecated). Please make sure that 'ete3.test' is included as a package by using the `packages` configuration field or the proper discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" and "data files" on setuptools documentation page. !! check.warn(importable) /usr/local/lib/python3.11/site-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning: Installing 'ete3.test.ete_evol_data.CladeModelCD' as data is deprecated, please list it in `packages`. !! ############################ # Package would be ignored # ############################ Python recognizes 'ete3.test.ete_evol_data.CladeModelCD' as an importable package, but it is not listed in the `packages` configuration of setuptools. 'ete3.test.ete_evol_data.CladeModelCD' has been automatically added to the distribution only because it may contain data files, but this behavior is likely to change in future versions of setuptools (and therefore is considered deprecated). Please make sure that 'ete3.test.ete_evol_data.CladeModelCD' is included as a package by using the `packages` configuration field or the proper discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" and "data files" on setuptools documentation page. !! check.warn(importable) /usr/local/lib/python3.11/site-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning: Installing 'ete3.test.ete_evol_data.L_example' as data is deprecated, please list it in `packages`. !! ############################ # Package would be ignored # ############################ Python recognizes 'ete3.test.ete_evol_data.L_example' as an importable package, but it is not listed in the `packages` configuration of setuptools. 'ete3.test.ete_evol_data.L_example' has been automatically added to the distribution only because it may contain data files, but this behavior is likely to change in future versions of setuptools (and therefore is considered deprecated). Please make sure that 'ete3.test.ete_evol_data.L_example' is included as a package by using the `packages` configuration field or the proper discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" and "data files" on setuptools documentation page. !! check.warn(importable) /usr/local/lib/python3.11/site-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning: Installing 'ete3.test.ete_evol_data.S_example' as data is deprecated, please list it in `packages`. !! ############################ # Package would be ignored # ############################ Python recognizes 'ete3.test.ete_evol_data.S_example' as an importable package, but it is not listed in the `packages` configuration of setuptools. 'ete3.test.ete_evol_data.S_example' has been automatically added to the distribution only because it may contain data files, but this behavior is likely to change in future versions of setuptools (and therefore is considered deprecated). Please make sure that 'ete3.test.ete_evol_data.S_example' is included as a package by using the `packages` configuration field or the proper discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" and "data files" on setuptools documentation page. !! check.warn(importable) /usr/local/lib/python3.11/site-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning: Installing 'ete3.test.ete_evol_data.S_example.paml.M1' as data is deprecated, please list it in `packages`. !! ############################ # Package would be ignored # ############################ Python recognizes 'ete3.test.ete_evol_data.S_example.paml.M1' as an importable package, but it is not listed in the `packages` configuration of setuptools. 'ete3.test.ete_evol_data.S_example.paml.M1' has been automatically added to the distribution only because it may contain data files, but this behavior is likely to change in future versions of setuptools (and therefore is considered deprecated). Please make sure that 'ete3.test.ete_evol_data.S_example.paml.M1' is included as a package by using the `packages` configuration field or the proper discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" and "data files" on setuptools documentation page. !! check.warn(importable) /usr/local/lib/python3.11/site-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning: Installing 'ete3.test.ete_evol_data.S_example.paml.M2' as data is deprecated, please list it in `packages`. !! ############################ # Package would be ignored # ############################ Python recognizes 'ete3.test.ete_evol_data.S_example.paml.M2' as an importable package, but it is not listed in the `packages` configuration of setuptools. 'ete3.test.ete_evol_data.S_example.paml.M2' has been automatically added to the distribution only because it may contain data files, but this behavior is likely to change in future versions of setuptools (and therefore is considered deprecated). Please make sure that 'ete3.test.ete_evol_data.S_example.paml.M2' is included as a package by using the `packages` configuration field or the proper discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" and "data files" on setuptools documentation page. !! check.warn(importable) /usr/local/lib/python3.11/site-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning: Installing 'ete3.test.ete_evol_data.S_example.paml.bsA' as data is deprecated, please list it in `packages`. !! ############################ # Package would be ignored # ############################ Python recognizes 'ete3.test.ete_evol_data.S_example.paml.bsA' as an importable package, but it is not listed in the `packages` configuration of setuptools. 'ete3.test.ete_evol_data.S_example.paml.bsA' has been automatically added to the distribution only because it may contain data files, but this behavior is likely to change in future versions of setuptools (and therefore is considered deprecated). Please make sure that 'ete3.test.ete_evol_data.S_example.paml.bsA' is included as a package by using the `packages` configuration field or the proper discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" and "data files" on setuptools documentation page. !! check.warn(importable) /usr/local/lib/python3.11/site-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning: Installing 'ete3.test.ete_evol_data.S_example.paml.bsA1' as data is deprecated, please list it in `packages`. !! ############################ # Package would be ignored # ############################ Python recognizes 'ete3.test.ete_evol_data.S_example.paml.bsA1' as an importable package, but it is not listed in the `packages` configuration of setuptools. 'ete3.test.ete_evol_data.S_example.paml.bsA1' has been automatically added to the distribution only because it may contain data files, but this behavior is likely to change in future versions of setuptools (and therefore is considered deprecated). Please make sure that 'ete3.test.ete_evol_data.S_example.paml.bsA1' is included as a package by using the `packages` configuration field or the proper discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" and "data files" on setuptools documentation page. !! check.warn(importable) /usr/local/lib/python3.11/site-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning: Installing 'ete3.test.ete_evol_data.S_example.paml.fb' as data is deprecated, please list it in `packages`. !! ############################ # Package would be ignored # ############################ Python recognizes 'ete3.test.ete_evol_data.S_example.paml.fb' as an importable package, but it is not listed in the `packages` configuration of setuptools. 'ete3.test.ete_evol_data.S_example.paml.fb' has been automatically added to the distribution only because it may contain data files, but this behavior is likely to change in future versions of setuptools (and therefore is considered deprecated). Please make sure that 'ete3.test.ete_evol_data.S_example.paml.fb' is included as a package by using the `packages` configuration field or the proper discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" and "data files" on setuptools documentation page. !! check.warn(importable) /usr/local/lib/python3.11/site-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning: Installing 'ete3.test.ete_evol_data.XS_example' as data is deprecated, please list it in `packages`. !! ############################ # Package would be ignored # ############################ Python recognizes 'ete3.test.ete_evol_data.XS_example' as an importable package, but it is not listed in the `packages` configuration of setuptools. 'ete3.test.ete_evol_data.XS_example' has been automatically added to the distribution only because it may contain data files, but this behavior is likely to change in future versions of setuptools (and therefore is considered deprecated). Please make sure that 'ete3.test.ete_evol_data.XS_example' is included as a package by using the `packages` configuration field or the proper discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" and "data files" on setuptools documentation page. !! check.warn(importable) /usr/local/lib/python3.11/site-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning: Installing 'ete3.test.ete_evol_data.protamine.PRM1' as data is deprecated, please list it in `packages`. !! ############################ # Package would be ignored # ############################ Python recognizes 'ete3.test.ete_evol_data.protamine.PRM1' as an importable package, but it is not listed in the `packages` configuration of setuptools. 'ete3.test.ete_evol_data.protamine.PRM1' has been automatically added to the distribution only because it may contain data files, but this behavior is likely to change in future versions of setuptools (and therefore is considered deprecated). Please make sure that 'ete3.test.ete_evol_data.protamine.PRM1' is included as a package by using the `packages` configuration field or the proper discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" and "data files" on setuptools documentation page. !! check.warn(importable) /usr/local/lib/python3.11/site-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning: Installing 'ete3.test.ete_evol_data.protamine.PRM1.paml.M0' as data is deprecated, please list it in `packages`. !! ############################ # Package would be ignored # ############################ Python recognizes 'ete3.test.ete_evol_data.protamine.PRM1.paml.M0' as an importable package, but it is not listed in the `packages` configuration of setuptools. 'ete3.test.ete_evol_data.protamine.PRM1.paml.M0' has been automatically added to the distribution only because it may contain data files, but this behavior is likely to change in future versions of setuptools (and therefore is considered deprecated). Please make sure that 'ete3.test.ete_evol_data.protamine.PRM1.paml.M0' is included as a package by using the `packages` configuration field or the proper discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" and "data files" on setuptools documentation page. !! check.warn(importable) /usr/local/lib/python3.11/site-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning: Installing 'ete3.test.ete_evol_data.protamine.PRM1.paml.M1' as data is deprecated, please list it in `packages`. !! ############################ # Package would be ignored # ############################ Python recognizes 'ete3.test.ete_evol_data.protamine.PRM1.paml.M1' as an importable package, but it is not listed in the `packages` configuration of setuptools. 'ete3.test.ete_evol_data.protamine.PRM1.paml.M1' has been automatically added to the distribution only because it may contain data files, but this behavior is likely to change in future versions of setuptools (and therefore is considered deprecated). Please make sure that 'ete3.test.ete_evol_data.protamine.PRM1.paml.M1' is included as a package by using the `packages` configuration field or the proper discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" and "data files" on setuptools documentation page. !! check.warn(importable) /usr/local/lib/python3.11/site-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning: Installing 'ete3.test.ete_evol_data.protamine.PRM1.paml.M2' as data is deprecated, please list it in `packages`. !! ############################ # Package would be ignored # ############################ Python recognizes 'ete3.test.ete_evol_data.protamine.PRM1.paml.M2' as an importable package, but it is not listed in the `packages` configuration of setuptools. 'ete3.test.ete_evol_data.protamine.PRM1.paml.M2' has been automatically added to the distribution only because it may contain data files, but this behavior is likely to change in future versions of setuptools (and therefore is considered deprecated). Please make sure that 'ete3.test.ete_evol_data.protamine.PRM1.paml.M2' is included as a package by using the `packages` configuration field or the proper discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" and "data files" on setuptools documentation page. !! check.warn(importable) /usr/local/lib/python3.11/site-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning: Installing 'ete3.test.ete_evol_data.protamine.PRM1.paml.M7' as data is deprecated, please list it in `packages`. !! ############################ # Package would be ignored # ############################ Python recognizes 'ete3.test.ete_evol_data.protamine.PRM1.paml.M7' as an importable package, but it is not listed in the `packages` configuration of setuptools. 'ete3.test.ete_evol_data.protamine.PRM1.paml.M7' has been automatically added to the distribution only because it may contain data files, but this behavior is likely to change in future versions of setuptools (and therefore is considered deprecated). Please make sure that 'ete3.test.ete_evol_data.protamine.PRM1.paml.M7' is included as a package by using the `packages` configuration field or the proper discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" and "data files" on setuptools documentation page. !! check.warn(importable) /usr/local/lib/python3.11/site-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning: Installing 'ete3.test.ete_evol_data.protamine.PRM1.paml.M8' as data is deprecated, please list it in `packages`. !! ############################ # Package would be ignored # ############################ Python recognizes 'ete3.test.ete_evol_data.protamine.PRM1.paml.M8' as an importable package, but it is not listed in the `packages` configuration of setuptools. 'ete3.test.ete_evol_data.protamine.PRM1.paml.M8' has been automatically added to the distribution only because it may contain data files, but this behavior is likely to change in future versions of setuptools (and therefore is considered deprecated). Please make sure that 'ete3.test.ete_evol_data.protamine.PRM1.paml.M8' is included as a package by using the `packages` configuration field or the proper discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" and "data files" on setuptools documentation page. !! check.warn(importable) /usr/local/lib/python3.11/site-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning: Installing 'ete3.test.ete_evol_data.protamine.PRM1.paml.fb' as data is deprecated, please list it in `packages`. !! ############################ # Package would be ignored # ############################ Python recognizes 'ete3.test.ete_evol_data.protamine.PRM1.paml.fb' as an importable package, but it is not listed in the `packages` configuration of setuptools. 'ete3.test.ete_evol_data.protamine.PRM1.paml.fb' has been automatically added to the distribution only because it may contain data files, but this behavior is likely to change in future versions of setuptools (and therefore is considered deprecated). Please make sure that 'ete3.test.ete_evol_data.protamine.PRM1.paml.fb' is included as a package by using the `packages` configuration field or the proper discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" and "data files" on setuptools documentation page. !! check.warn(importable) /usr/local/lib/python3.11/site-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning: Installing 'ete3.test.ete_evol_data.protamine.PRM1.slr' as data is deprecated, please list it in `packages`. !! ############################ # Package would be ignored # ############################ Python recognizes 'ete3.test.ete_evol_data.protamine.PRM1.slr' as an importable package, but it is not listed in the `packages` configuration of setuptools. 'ete3.test.ete_evol_data.protamine.PRM1.slr' has been automatically added to the distribution only because it may contain data files, but this behavior is likely to change in future versions of setuptools (and therefore is considered deprecated). Please make sure that 'ete3.test.ete_evol_data.protamine.PRM1.slr' is included as a package by using the `packages` configuration field or the proper discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" and "data files" on setuptools documentation page. !! check.warn(importable) /usr/local/lib/python3.11/site-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning: Installing 'ete3.test.test_ete_build' as data is deprecated, please list it in `packages`. !! ############################ # Package would be ignored # ############################ Python recognizes 'ete3.test.test_ete_build' as an importable package, but it is not listed in the `packages` configuration of setuptools. 'ete3.test.test_ete_build' has been automatically added to the distribution only because it may contain data files, but this behavior is likely to change in future versions of setuptools (and therefore is considered deprecated). Please make sure that 'ete3.test.test_ete_build' is included as a package by using the `packages` configuration field or the proper discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" and "data files" on setuptools documentation page. !! check.warn(importable) /usr/local/lib/python3.11/site-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning: Installing 'ete3.test.test_issue258' as data is deprecated, please list it in `packages`. !! ############################ # Package would be ignored # ############################ Python recognizes 'ete3.test.test_issue258' as an importable package, but it is not listed in the `packages` configuration of setuptools. 'ete3.test.test_issue258' has been automatically added to the distribution only because it may contain data files, but this behavior is likely to change in future versions of setuptools (and therefore is considered deprecated). Please make sure that 'ete3.test.test_issue258' is included as a package by using the `packages` configuration field or the proper discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" and "data files" on setuptools documentation page. !! check.warn(importable) /usr/local/lib/python3.11/site-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning: Installing 'ete3.test.test_treeview' as data is deprecated, please list it in `packages`. !! ############################ # Package would be ignored # ############################ Python recognizes 'ete3.test.test_treeview' as an importable package, but it is not listed in the `packages` configuration of setuptools. 'ete3.test.test_treeview' has been automatically added to the distribution only because it may contain data files, but this behavior is likely to change in future versions of setuptools (and therefore is considered deprecated). Please make sure that 'ete3.test.test_treeview' is included as a package by using the `packages` configuration field or the proper discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" and "data files" on setuptools documentation page. !! check.warn(importable) /usr/local/lib/python3.11/site-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning: Installing 'ete3.tools' as data is deprecated, please list it in `packages`. !! ############################ # Package would be ignored # ############################ Python recognizes 'ete3.tools' as an importable package, but it is not listed in the `packages` configuration of setuptools. 'ete3.tools' has been automatically added to the distribution only because it may contain data files, but this behavior is likely to change in future versions of setuptools (and therefore is considered deprecated). Please make sure that 'ete3.tools' is included as a package by using the `packages` configuration field or the proper discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" and "data files" on setuptools documentation page. !! check.warn(importable) /usr/local/lib/python3.11/site-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning: Installing 'ete3.tools.ete_build_lib' as data is deprecated, please list it in `packages`. !! ############################ # Package would be ignored # ############################ Python recognizes 'ete3.tools.ete_build_lib' as an importable package, but it is not listed in the `packages` configuration of setuptools. 'ete3.tools.ete_build_lib' has been automatically added to the distribution only because it may contain data files, but this behavior is likely to change in future versions of setuptools (and therefore is considered deprecated). Please make sure that 'ete3.tools.ete_build_lib' is included as a package by using the `packages` configuration field or the proper discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" and "data files" on setuptools documentation page. !! check.warn(importable) /usr/local/lib/python3.11/site-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning: Installing 'ete3.tools.ete_build_lib.task' as data is deprecated, please list it in `packages`. !! ############################ # Package would be ignored # ############################ Python recognizes 'ete3.tools.ete_build_lib.task' as an importable package, but it is not listed in the `packages` configuration of setuptools. 'ete3.tools.ete_build_lib.task' has been automatically added to the distribution only because it may contain data files, but this behavior is likely to change in future versions of setuptools (and therefore is considered deprecated). Please make sure that 'ete3.tools.ete_build_lib.task' is included as a package by using the `packages` configuration field or the proper discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" and "data files" on setuptools documentation page. !! check.warn(importable) /usr/local/lib/python3.11/site-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning: Installing 'ete3.tools.ete_build_lib.workflow' as data is deprecated, please list it in `packages`. !! ############################ # Package would be ignored # ############################ Python recognizes 'ete3.tools.ete_build_lib.workflow' as an importable package, but it is not listed in the `packages` configuration of setuptools. 'ete3.tools.ete_build_lib.workflow' has been automatically added to the distribution only because it may contain data files, but this behavior is likely to change in future versions of setuptools (and therefore is considered deprecated). Please make sure that 'ete3.tools.ete_build_lib.workflow' is included as a package by using the `packages` configuration field or the proper discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" and "data files" on setuptools documentation page. !! check.warn(importable) /usr/local/lib/python3.11/site-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning: Installing 'ete3.treeview' as data is deprecated, please list it in `packages`. !! ############################ # Package would be ignored # ############################ Python recognizes 'ete3.treeview' as an importable package, but it is not listed in the `packages` configuration of setuptools. 'ete3.treeview' has been automatically added to the distribution only because it may contain data files, but this behavior is likely to change in future versions of setuptools (and therefore is considered deprecated). Please make sure that 'ete3.treeview' is included as a package by using the `packages` configuration field or the proper discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" and "data files" on setuptools documentation page. !! check.warn(importable) /usr/local/lib/python3.11/site-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning: Installing 'ete3.webplugin' as data is deprecated, please list it in `packages`. !! ############################ # Package would be ignored # ############################ Python recognizes 'ete3.webplugin' as an importable package, but it is not listed in the `packages` configuration of setuptools. 'ete3.webplugin' has been automatically added to the distribution only because it may contain data files, but this behavior is likely to change in future versions of setuptools (and therefore is considered deprecated). Please make sure that 'ete3.webplugin' is included as a package by using the `packages` configuration field or the proper discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" and "data files" on setuptools documentation page. !! check.warn(importable) running install_lib creating /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11 creating /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages creating /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3 copying build/lib/ete3/_ph.py -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3 copying build/lib/ete3/__init__.py -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3 copying build/lib/ete3/version.py -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3 creating /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/webplugin copying build/lib/ete3/webplugin/webapp.py -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/webplugin copying build/lib/ete3/webplugin/__init__.py -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/webplugin creating /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/treeview copying build/lib/ete3/treeview/zoom_in.png -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/treeview copying build/lib/ete3/treeview/qt4_circular_render.py -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/treeview copying build/lib/ete3/treeview/filesave.png -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/treeview copying build/lib/ete3/treeview/y_expand.png -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/treeview copying build/lib/ete3/treeview/show_newick.ui -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/treeview copying build/lib/ete3/treeview/main.py -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/treeview copying build/lib/ete3/treeview/about.ui -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/treeview copying build/lib/ete3/treeview/templates.py -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/treeview copying build/lib/ete3/treeview/qt4_render.py -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/treeview copying build/lib/ete3/treeview/fileopen.png -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/treeview copying build/lib/ete3/treeview/layouts.py -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/treeview copying build/lib/ete3/treeview/__init__.py -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/treeview copying build/lib/ete3/treeview/_open_newick.py -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/treeview copying build/lib/ete3/treeview/qt4_compile_resources.sh -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/treeview copying build/lib/ete3/treeview/ete_resources.qrc -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/treeview copying build/lib/ete3/treeview/faces.py -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/treeview copying build/lib/ete3/treeview/_mainwindow.py -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/treeview copying build/lib/ete3/treeview/x_reduce.png -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/treeview copying build/lib/ete3/treeview/image_properties.ui -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/treeview copying build/lib/ete3/treeview/search.png -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/treeview copying build/lib/ete3/treeview/zoom_out.png -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/treeview copying build/lib/ete3/treeview/qt4_face_render.py -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/treeview copying build/lib/ete3/treeview/force_topo.png -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/treeview copying build/lib/ete3/treeview/open_newick.ui -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/treeview copying build/lib/ete3/treeview/show_support.png -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/treeview copying build/lib/ete3/treeview/_show_newick.py -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/treeview copying build/lib/ete3/treeview/show_dist.png -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/treeview copying build/lib/ete3/treeview/show_newick.png -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/treeview copying build/lib/ete3/treeview/show_names.png -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/treeview copying build/lib/ete3/treeview/qt4_rect_render.py -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/treeview copying build/lib/ete3/treeview/ete_qt4app.ui -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/treeview copying build/lib/ete3/treeview/qt.py -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/treeview copying build/lib/ete3/treeview/svg_colors.py -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/treeview copying build/lib/ete3/treeview/_about.py -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/treeview copying build/lib/ete3/treeview/fit_region.png -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/treeview copying build/lib/ete3/treeview/_show_codeml.py -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/treeview copying build/lib/ete3/treeview/drawer.py -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/treeview copying build/lib/ete3/treeview/qt4_gui.py -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/treeview copying build/lib/ete3/treeview/y_reduce.png -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/treeview copying build/lib/ete3/treeview/search_dialog.ui -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/treeview copying build/lib/ete3/treeview/x_expand.png -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/treeview copying build/lib/ete3/treeview/ete_resources_rc.py -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/treeview copying build/lib/ete3/treeview/ete_logo.png -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/treeview copying build/lib/ete3/treeview/fit_tree.png -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/treeview copying build/lib/ete3/treeview/export_pdf.png -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/treeview copying build/lib/ete3/treeview/ete_icon.png -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/treeview copying build/lib/ete3/treeview/clean_search.png -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/treeview copying build/lib/ete3/treeview/_search_dialog.py -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/treeview copying build/lib/ete3/treeview/node_gui_actions.py -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/treeview creating /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/parser copying build/lib/ete3/parser/__init__.py -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/parser copying build/lib/ete3/parser/phylip.py -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/parser copying build/lib/ete3/parser/text_arraytable.py -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/parser copying build/lib/ete3/parser/paml.py -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/parser copying build/lib/ete3/parser/fasta.py -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/parser copying build/lib/ete3/parser/newick.py -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/parser creating /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/phyloxml copying build/lib/ete3/phyloxml/__init__.py -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/phyloxml copying build/lib/ete3/phyloxml/_phyloxml.py -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/phyloxml copying build/lib/ete3/phyloxml/_phyloxml_tree.py -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/phyloxml creating /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/tools copying build/lib/ete3/tools/ete_expand.py -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/tools copying build/lib/ete3/tools/ete_evol.py -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/tools creating /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/tools/ete_build_lib copying build/lib/ete3/tools/ete_build_lib/db.py -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/tools/ete_build_lib copying build/lib/ete3/tools/ete_build_lib/visualize.py -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/tools/ete_build_lib copying build/lib/ete3/tools/ete_build_lib/seqio.py -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/tools/ete_build_lib copying build/lib/ete3/tools/ete_build_lib/curses_gui.py -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/tools/ete_build_lib copying build/lib/ete3/tools/ete_build_lib/master_job.py -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/tools/ete_build_lib copying build/lib/ete3/tools/ete_build_lib/getch.py -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/tools/ete_build_lib copying build/lib/ete3/tools/ete_build_lib/__init__.py -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/tools/ete_build_lib copying build/lib/ete3/tools/ete_build_lib/interface.py -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/tools/ete_build_lib copying build/lib/ete3/tools/ete_build_lib/configcheck.py -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/tools/ete_build_lib copying build/lib/ete3/tools/ete_build_lib/configobj.py -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/tools/ete_build_lib copying build/lib/ete3/tools/ete_build_lib/apps.py -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/tools/ete_build_lib creating /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/tools/ete_build_lib/workflow copying build/lib/ete3/tools/ete_build_lib/workflow/supermatrix.py -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/tools/ete_build_lib/workflow copying build/lib/ete3/tools/ete_build_lib/workflow/common.py -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/tools/ete_build_lib/workflow copying build/lib/ete3/tools/ete_build_lib/workflow/__init__.py -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/tools/ete_build_lib/workflow copying build/lib/ete3/tools/ete_build_lib/workflow/genetree.py -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/tools/ete_build_lib/workflow copying build/lib/ete3/tools/ete_build_lib/validate.py -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/tools/ete_build_lib copying build/lib/ete3/tools/ete_build_lib/logger.py -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/tools/ete_build_lib copying build/lib/ete3/tools/ete_build_lib/utils.py -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/tools/ete_build_lib copying build/lib/ete3/tools/ete_build_lib/sge.py -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/tools/ete_build_lib copying build/lib/ete3/tools/ete_build_lib/ordereddict.py -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/tools/ete_build_lib copying build/lib/ete3/tools/ete_build_lib/master_task.py -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/tools/ete_build_lib copying build/lib/ete3/tools/ete_build_lib/errors.py -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/tools/ete_build_lib copying build/lib/ete3/tools/ete_build_lib/scheduler.py -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/tools/ete_build_lib creating /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/tools/ete_build_lib/task copying build/lib/ete3/tools/ete_build_lib/task/phyml.py -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/tools/ete_build_lib/task copying build/lib/ete3/tools/ete_build_lib/task/clustalo.py -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/tools/ete_build_lib/task copying build/lib/ete3/tools/ete_build_lib/task/tcoffee.py -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/tools/ete_build_lib/task copying build/lib/ete3/tools/ete_build_lib/task/msf.py -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/tools/ete_build_lib/task copying build/lib/ete3/tools/ete_build_lib/task/dummytree.py -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/tools/ete_build_lib/task copying build/lib/ete3/tools/ete_build_lib/task/__init__.py -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/tools/ete_build_lib/task copying build/lib/ete3/tools/ete_build_lib/task/iqtree.py -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/tools/ete_build_lib/task copying build/lib/ete3/tools/ete_build_lib/task/jmodeltest.py -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/tools/ete_build_lib/task copying build/lib/ete3/tools/ete_build_lib/task/prottest.py -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/tools/ete_build_lib/task copying build/lib/ete3/tools/ete_build_lib/task/dummyalg.py -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/tools/ete_build_lib/task copying build/lib/ete3/tools/ete_build_lib/task/muscle.py -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/tools/ete_build_lib/task copying build/lib/ete3/tools/ete_build_lib/task/fasttree.py -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/tools/ete_build_lib/task copying build/lib/ete3/tools/ete_build_lib/task/merger.py -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/tools/ete_build_lib/task copying build/lib/ete3/tools/ete_build_lib/task/dialigntx.py -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/tools/ete_build_lib/task copying build/lib/ete3/tools/ete_build_lib/task/concat_alg.py -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/tools/ete_build_lib/task copying build/lib/ete3/tools/ete_build_lib/task/cog_creator.py -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/tools/ete_build_lib/task copying build/lib/ete3/tools/ete_build_lib/task/uhire.py -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/tools/ete_build_lib/task copying build/lib/ete3/tools/ete_build_lib/task/mafft.py -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/tools/ete_build_lib/task copying build/lib/ete3/tools/ete_build_lib/task/trimal.py -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/tools/ete_build_lib/task copying build/lib/ete3/tools/ete_build_lib/task/raxml.py -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/tools/ete_build_lib/task copying build/lib/ete3/tools/ete_build_lib/task/cog_selector.py -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/tools/ete_build_lib/task copying build/lib/ete3/tools/ete_build_lib/task/meta_aligner.py -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/tools/ete_build_lib/task copying build/lib/ete3/tools/ete_build_lib/task/prottest2.py -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/tools/ete_build_lib/task copying build/lib/ete3/tools/ete_build_lib/task/pmodeltest.py -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/tools/ete_build_lib/task copying build/lib/ete3/tools/common.py -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/tools copying build/lib/ete3/tools/__init__.py -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/tools copying build/lib/ete3/tools/ete_build.cfg -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/tools copying build/lib/ete3/tools/ete_maptrees.py -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/tools copying build/lib/ete3/tools/ete_build.py -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/tools copying build/lib/ete3/tools/ete_mod.py -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/tools copying build/lib/ete3/tools/ete_ncbiquery.py -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/tools copying build/lib/ete3/tools/ete_compare.py -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/tools copying build/lib/ete3/tools/ete_annotate.py -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/tools copying build/lib/ete3/tools/ete_extract.py -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/tools copying build/lib/ete3/tools/ete_upgrade_tools.py -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/tools copying build/lib/ete3/tools/ete.py -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/tools copying build/lib/ete3/tools/utils.py -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/tools copying build/lib/ete3/tools/ete_generate.py -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/tools copying build/lib/ete3/tools/ete_view.py -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/tools copying build/lib/ete3/tools/ete_split.py -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/tools creating /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/nexml copying build/lib/ete3/nexml/__init__.py -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/nexml copying build/lib/ete3/nexml/_nexml.py -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/nexml copying build/lib/ete3/nexml/_nexml_tree.py -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/nexml creating /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/ncbi_taxonomy copying build/lib/ete3/ncbi_taxonomy/__init__.py -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/ncbi_taxonomy copying build/lib/ete3/ncbi_taxonomy/ncbiquery.py -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/ncbi_taxonomy creating /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/ncbi_taxonomy/SQLite-Levenshtein copying build/lib/ete3/ncbi_taxonomy/SQLite-Levenshtein/.gitignore -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/ncbi_taxonomy/SQLite-Levenshtein creating /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/ncbi_taxonomy/SQLite-Levenshtein/tests copying build/lib/ete3/ncbi_taxonomy/SQLite-Levenshtein/tests/levenshtein-test.sql -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/ncbi_taxonomy/SQLite-Levenshtein/tests copying build/lib/ete3/ncbi_taxonomy/SQLite-Levenshtein/tests/README -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/ncbi_taxonomy/SQLite-Levenshtein/tests copying build/lib/ete3/ncbi_taxonomy/SQLite-Levenshtein/Makefile -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/ncbi_taxonomy/SQLite-Levenshtein copying build/lib/ete3/ncbi_taxonomy/SQLite-Levenshtein/README -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/ncbi_taxonomy/SQLite-Levenshtein creating /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/ncbi_taxonomy/SQLite-Levenshtein/src copying build/lib/ete3/ncbi_taxonomy/SQLite-Levenshtein/src/levenshtein.c -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/ncbi_taxonomy/SQLite-Levenshtein/src copying build/lib/ete3/ncbi_taxonomy/SQLite-Levenshtein/EXAMPLE -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/ncbi_taxonomy/SQLite-Levenshtein creating /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/phylo copying build/lib/ete3/phylo/__init__.py -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/phylo copying build/lib/ete3/phylo/spoverlap.py -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/phylo copying build/lib/ete3/phylo/evolevents.py -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/phylo copying build/lib/ete3/phylo/reconciliation.py -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/phylo copying build/lib/ete3/phylo/phylotree.py -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/phylo creating /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/clustering copying build/lib/ete3/clustering/clustertree.py -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/clustering copying build/lib/ete3/clustering/__init__.py -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/clustering copying build/lib/ete3/clustering/clustvalidation.py -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/clustering copying build/lib/ete3/utils.py -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3 creating /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/phylomedb copying build/lib/ete3/phylomedb/phylomeDB3.py -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/phylomedb copying build/lib/ete3/phylomedb/__init__.py -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/phylomedb copying build/lib/ete3/phylomedb/phylomeDB.py -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/phylomedb creating /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/test copying build/lib/ete3/test/test_arraytable.py -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/test creating /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/test/test_ete_build copying build/lib/ete3/test/test_ete_build/test_sptree.py -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/test/test_ete_build copying build/lib/ete3/test/test_ete_build/fake_cogs.tsv -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/test/test_ete_build copying build/lib/ete3/test/test_ete_build/P53.alg.fa -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/test/test_ete_build copying build/lib/ete3/test/test_ete_build/test_manual_alg.py -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/test/test_ete_build copying build/lib/ete3/test/test_ete_build/NUP62.nt.fa -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/test/test_ete_build copying build/lib/ete3/test/test_ete_build/__main__.py -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/test/test_ete_build copying build/lib/ete3/test/test_ete_build/__init__.py -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/test/test_ete_build copying build/lib/ete3/test/test_ete_build/fake_alg1.nt.fa -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/test/test_ete_build copying build/lib/ete3/test/test_ete_build/fake_alg2.nt.fa -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/test/test_ete_build copying build/lib/ete3/test/test_ete_build/fake_alg2.fa -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/test/test_ete_build copying build/lib/ete3/test/test_ete_build/test_modeltest.py -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/test/test_ete_build copying build/lib/ete3/test/test_ete_build/test_genetree.py -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/test/test_ete_build copying build/lib/ete3/test/test_ete_build/NUP62.aa.fa -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/test/test_ete_build copying build/lib/ete3/test/test_ete_build/cog_seqs.fa -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/test/test_ete_build copying build/lib/ete3/test/test_ete_build/cog_seqs.nt.fa -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/test/test_ete_build copying build/lib/ete3/test/test_ete_build/fake_alg3.nt.fa -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/test/test_ete_build copying build/lib/ete3/test/test_ete_build/fake_alg3.fa -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/test/test_ete_build copying build/lib/ete3/test/test_ete_build/P53.fa -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/test/test_ete_build copying build/lib/ete3/test/test_ete_build/fake_alg1.fa -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/test/test_ete_build copying build/lib/ete3/test/test_clustertree.py -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/test copying build/lib/ete3/test/test_seqgroup.py -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/test copying build/lib/ete3/test/test_interop.py -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/test copying build/lib/ete3/test/test_all.py -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/test creating /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/test/test_issue258 copying build/lib/ete3/test/test_issue258/issue258.py -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/test/test_issue258 copying build/lib/ete3/test/__init__.py -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/test creating /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/test/test_treeview copying build/lib/ete3/test/test_treeview/bubble_map.png -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/test/test_treeview copying build/lib/ete3/test/test_treeview/mouse.png -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/test/test_treeview copying build/lib/ete3/test/test_treeview/barchart_and_piechart_faces.py -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/test/test_treeview copying build/lib/ete3/test/test_treeview/rotated_faces.png -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/test/test_treeview copying build/lib/ete3/test/test_treeview/face_rotation.py -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/test/test_treeview copying build/lib/ete3/test/test_treeview/test_all_treeview.py -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/test/test_treeview copying build/lib/ete3/test/test_treeview/__init__.py -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/test/test_treeview copying build/lib/ete3/test/test_treeview/node_style.py -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/test/test_treeview copying build/lib/ete3/test/test_treeview/new_seq_face.py -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/test/test_treeview copying build/lib/ete3/test/test_treeview/face_grid.py -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/test/test_treeview copying build/lib/ete3/test/test_treeview/barcharts.png -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/test/test_treeview copying build/lib/ete3/test/test_treeview/img_faces.py -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/test/test_treeview copying build/lib/ete3/test/test_treeview/item_faces.py -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/test/test_treeview copying build/lib/ete3/test/test_treeview/random_draw.py -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/test/test_treeview copying build/lib/ete3/test/test_treeview/tree_faces.py -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/test/test_treeview copying build/lib/ete3/test/test_treeview/human.png -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/test/test_treeview copying build/lib/ete3/test/test_treeview/fish.png -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/test/test_treeview copying build/lib/ete3/test/test_treeview/floating_piecharts.py -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/test/test_treeview copying build/lib/ete3/test/test_treeview/item_faces.png -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/test/test_treeview copying build/lib/ete3/test/test_treeview/node_background.py -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/test/test_treeview copying build/lib/ete3/test/test_treeview/face_positions.py -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/test/test_treeview copying build/lib/ete3/test/test_treeview/node_background.png -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/test/test_treeview copying build/lib/ete3/test/test_treeview/fly.png -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/test/test_treeview copying build/lib/ete3/test/test_treeview/node_style.png -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/test/test_treeview copying build/lib/ete3/test/test_treeview/seq_motif_faces.png -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/test/test_treeview copying build/lib/ete3/test/test_treeview/chimp.png -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/test/test_treeview copying build/lib/ete3/test/test_treeview/phylotree_visualization.py -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/test/test_treeview copying build/lib/ete3/test/test_treeview/dog.png -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/test/test_treeview copying build/lib/ete3/test/test_treeview/seq_motif_faces.py -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/test/test_treeview copying build/lib/ete3/test/test_treeview/motifs.png -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/test/test_treeview copying build/lib/ete3/test/test_treeview/bubble_map.py -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/test/test_treeview copying build/lib/ete3/test/test_treeview/float_piechart.png -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/test/test_treeview copying build/lib/ete3/test/test_treeview/img_faces.png -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/test/test_treeview copying build/lib/ete3/test/test_treeview/tree_faces.png -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/test/test_treeview copying build/lib/ete3/test/test_treeview/seqmotif.png -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/test/test_treeview copying build/lib/ete3/test/test_tree.py -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/test copying build/lib/ete3/test/test_ete_evol.py -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/test copying build/lib/ete3/test/datasets.py -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/test creating /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/test/ete_evol_data creating /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/test/ete_evol_data/S_example copying build/lib/ete3/test/ete_evol_data/S_example/ali.fasta -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/test/ete_evol_data/S_example creating /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/test/ete_evol_data/S_example/paml creating /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/test/ete_evol_data/S_example/paml/M2 copying build/lib/ete3/test/ete_evol_data/S_example/paml/M2/rst1 -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/test/ete_evol_data/S_example/paml/M2 copying build/lib/ete3/test/ete_evol_data/S_example/paml/M2/lnf -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/test/ete_evol_data/S_example/paml/M2 copying build/lib/ete3/test/ete_evol_data/S_example/paml/M2/2NG.dS -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/test/ete_evol_data/S_example/paml/M2 copying build/lib/ete3/test/ete_evol_data/S_example/paml/M2/2NG.dN -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/test/ete_evol_data/S_example/paml/M2 copying build/lib/ete3/test/ete_evol_data/S_example/paml/M2/algn -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/test/ete_evol_data/S_example/paml/M2 copying build/lib/ete3/test/ete_evol_data/S_example/paml/M2/4fold.nuc -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/test/ete_evol_data/S_example/paml/M2 copying build/lib/ete3/test/ete_evol_data/S_example/paml/M2/tree -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/test/ete_evol_data/S_example/paml/M2 copying build/lib/ete3/test/ete_evol_data/S_example/paml/M2/2NG.t -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/test/ete_evol_data/S_example/paml/M2 copying build/lib/ete3/test/ete_evol_data/S_example/paml/M2/rst -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/test/ete_evol_data/S_example/paml/M2 copying build/lib/ete3/test/ete_evol_data/S_example/paml/M2/rub -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/test/ete_evol_data/S_example/paml/M2 copying build/lib/ete3/test/ete_evol_data/S_example/paml/M2/out -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/test/ete_evol_data/S_example/paml/M2 copying build/lib/ete3/test/ete_evol_data/S_example/paml/M2/tmp.ctl -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/test/ete_evol_data/S_example/paml/M2 creating /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/test/ete_evol_data/S_example/paml/M1 copying build/lib/ete3/test/ete_evol_data/S_example/paml/M1/rst1 -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/test/ete_evol_data/S_example/paml/M1 copying build/lib/ete3/test/ete_evol_data/S_example/paml/M1/lnf -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/test/ete_evol_data/S_example/paml/M1 copying build/lib/ete3/test/ete_evol_data/S_example/paml/M1/2NG.dS -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/test/ete_evol_data/S_example/paml/M1 copying build/lib/ete3/test/ete_evol_data/S_example/paml/M1/2NG.dN -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/test/ete_evol_data/S_example/paml/M1 copying build/lib/ete3/test/ete_evol_data/S_example/paml/M1/algn -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/test/ete_evol_data/S_example/paml/M1 copying build/lib/ete3/test/ete_evol_data/S_example/paml/M1/4fold.nuc -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/test/ete_evol_data/S_example/paml/M1 copying build/lib/ete3/test/ete_evol_data/S_example/paml/M1/tree -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/test/ete_evol_data/S_example/paml/M1 copying build/lib/ete3/test/ete_evol_data/S_example/paml/M1/2NG.t -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/test/ete_evol_data/S_example/paml/M1 copying build/lib/ete3/test/ete_evol_data/S_example/paml/M1/rst -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/test/ete_evol_data/S_example/paml/M1 copying build/lib/ete3/test/ete_evol_data/S_example/paml/M1/rub -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/test/ete_evol_data/S_example/paml/M1 copying build/lib/ete3/test/ete_evol_data/S_example/paml/M1/out -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/test/ete_evol_data/S_example/paml/M1 copying build/lib/ete3/test/ete_evol_data/S_example/paml/M1/tmp.ctl -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/test/ete_evol_data/S_example/paml/M1 creating /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/test/ete_evol_data/S_example/paml/bsA1 copying build/lib/ete3/test/ete_evol_data/S_example/paml/bsA1/rst1 -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/test/ete_evol_data/S_example/paml/bsA1 copying build/lib/ete3/test/ete_evol_data/S_example/paml/bsA1/lnf -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/test/ete_evol_data/S_example/paml/bsA1 copying build/lib/ete3/test/ete_evol_data/S_example/paml/bsA1/2NG.dS -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/test/ete_evol_data/S_example/paml/bsA1 copying build/lib/ete3/test/ete_evol_data/S_example/paml/bsA1/2NG.dN -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/test/ete_evol_data/S_example/paml/bsA1 copying build/lib/ete3/test/ete_evol_data/S_example/paml/bsA1/algn -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/test/ete_evol_data/S_example/paml/bsA1 copying build/lib/ete3/test/ete_evol_data/S_example/paml/bsA1/4fold.nuc -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/test/ete_evol_data/S_example/paml/bsA1 copying build/lib/ete3/test/ete_evol_data/S_example/paml/bsA1/tree -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/test/ete_evol_data/S_example/paml/bsA1 copying build/lib/ete3/test/ete_evol_data/S_example/paml/bsA1/2NG.t -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/test/ete_evol_data/S_example/paml/bsA1 copying build/lib/ete3/test/ete_evol_data/S_example/paml/bsA1/rst -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/test/ete_evol_data/S_example/paml/bsA1 copying build/lib/ete3/test/ete_evol_data/S_example/paml/bsA1/rub -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/test/ete_evol_data/S_example/paml/bsA1 copying build/lib/ete3/test/ete_evol_data/S_example/paml/bsA1/out -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/test/ete_evol_data/S_example/paml/bsA1 copying build/lib/ete3/test/ete_evol_data/S_example/paml/bsA1/tmp.ctl -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/test/ete_evol_data/S_example/paml/bsA1 creating /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/test/ete_evol_data/S_example/paml/fb copying build/lib/ete3/test/ete_evol_data/S_example/paml/fb/rst1 -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/test/ete_evol_data/S_example/paml/fb copying build/lib/ete3/test/ete_evol_data/S_example/paml/fb/lnf -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/test/ete_evol_data/S_example/paml/fb copying build/lib/ete3/test/ete_evol_data/S_example/paml/fb/2NG.dS -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/test/ete_evol_data/S_example/paml/fb copying build/lib/ete3/test/ete_evol_data/S_example/paml/fb/2NG.dN -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/test/ete_evol_data/S_example/paml/fb copying build/lib/ete3/test/ete_evol_data/S_example/paml/fb/algn -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/test/ete_evol_data/S_example/paml/fb copying build/lib/ete3/test/ete_evol_data/S_example/paml/fb/4fold.nuc -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/test/ete_evol_data/S_example/paml/fb copying build/lib/ete3/test/ete_evol_data/S_example/paml/fb/tree -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/test/ete_evol_data/S_example/paml/fb copying build/lib/ete3/test/ete_evol_data/S_example/paml/fb/2NG.t -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/test/ete_evol_data/S_example/paml/fb copying build/lib/ete3/test/ete_evol_data/S_example/paml/fb/rst -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/test/ete_evol_data/S_example/paml/fb copying build/lib/ete3/test/ete_evol_data/S_example/paml/fb/rub -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/test/ete_evol_data/S_example/paml/fb copying build/lib/ete3/test/ete_evol_data/S_example/paml/fb/out -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/test/ete_evol_data/S_example/paml/fb copying build/lib/ete3/test/ete_evol_data/S_example/paml/fb/tmp.ctl -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/test/ete_evol_data/S_example/paml/fb creating /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/test/ete_evol_data/S_example/paml/bsA copying build/lib/ete3/test/ete_evol_data/S_example/paml/bsA/rst1 -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/test/ete_evol_data/S_example/paml/bsA copying build/lib/ete3/test/ete_evol_data/S_example/paml/bsA/lnf -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/test/ete_evol_data/S_example/paml/bsA copying build/lib/ete3/test/ete_evol_data/S_example/paml/bsA/2NG.dS -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/test/ete_evol_data/S_example/paml/bsA copying build/lib/ete3/test/ete_evol_data/S_example/paml/bsA/2NG.dN -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/test/ete_evol_data/S_example/paml/bsA copying build/lib/ete3/test/ete_evol_data/S_example/paml/bsA/algn -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/test/ete_evol_data/S_example/paml/bsA copying build/lib/ete3/test/ete_evol_data/S_example/paml/bsA/4fold.nuc -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/test/ete_evol_data/S_example/paml/bsA copying build/lib/ete3/test/ete_evol_data/S_example/paml/bsA/tree -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/test/ete_evol_data/S_example/paml/bsA copying build/lib/ete3/test/ete_evol_data/S_example/paml/bsA/2NG.t -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/test/ete_evol_data/S_example/paml/bsA copying build/lib/ete3/test/ete_evol_data/S_example/paml/bsA/rst -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/test/ete_evol_data/S_example/paml/bsA copying build/lib/ete3/test/ete_evol_data/S_example/paml/bsA/rub -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/test/ete_evol_data/S_example/paml/bsA copying build/lib/ete3/test/ete_evol_data/S_example/paml/bsA/out -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/test/ete_evol_data/S_example/paml/bsA copying build/lib/ete3/test/ete_evol_data/S_example/paml/bsA/tmp.ctl -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/test/ete_evol_data/S_example/paml/bsA copying build/lib/ete3/test/ete_evol_data/S_example/tree.nw -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/test/ete_evol_data/S_example creating /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/test/ete_evol_data/XS_example copying build/lib/ete3/test/ete_evol_data/XS_example/ali.fasta -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/test/ete_evol_data/XS_example copying build/lib/ete3/test/ete_evol_data/XS_example/tree.nw -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/test/ete_evol_data/XS_example creating /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/test/ete_evol_data/L_example copying build/lib/ete3/test/ete_evol_data/L_example/measuring_L_tree.nw -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/test/ete_evol_data/L_example copying build/lib/ete3/test/ete_evol_data/L_example/alignment_L_measuring_evol.fasta -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/test/ete_evol_data/L_example creating /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/test/ete_evol_data/protamine creating /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/test/ete_evol_data/protamine/PRM1 creating /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/test/ete_evol_data/protamine/PRM1/slr copying build/lib/ete3/test/ete_evol_data/protamine/PRM1/slr/rst1 -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/test/ete_evol_data/protamine/PRM1/slr copying build/lib/ete3/test/ete_evol_data/protamine/PRM1/slr/slr.ctl -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/test/ete_evol_data/protamine/PRM1/slr copying build/lib/ete3/test/ete_evol_data/protamine/PRM1/slr/lnf -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/test/ete_evol_data/protamine/PRM1/slr copying build/lib/ete3/test/ete_evol_data/protamine/PRM1/slr/2NG.dS -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/test/ete_evol_data/protamine/PRM1/slr copying build/lib/ete3/test/ete_evol_data/protamine/PRM1/slr/2NG.dN -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/test/ete_evol_data/protamine/PRM1/slr copying build/lib/ete3/test/ete_evol_data/protamine/PRM1/slr/rst.fb -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/test/ete_evol_data/protamine/PRM1/slr copying build/lib/ete3/test/ete_evol_data/protamine/PRM1/slr/tree.slr -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/test/ete_evol_data/protamine/PRM1/slr copying build/lib/ete3/test/ete_evol_data/protamine/PRM1/slr/algn -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/test/ete_evol_data/protamine/PRM1/slr copying build/lib/ete3/test/ete_evol_data/protamine/PRM1/slr/4fold.nuc -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/test/ete_evol_data/protamine/PRM1/slr copying build/lib/ete3/test/ete_evol_data/protamine/PRM1/slr/tree -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/test/ete_evol_data/protamine/PRM1/slr copying build/lib/ete3/test/ete_evol_data/protamine/PRM1/slr/2NG.t -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/test/ete_evol_data/protamine/PRM1/slr copying build/lib/ete3/test/ete_evol_data/protamine/PRM1/slr/fb.out -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/test/ete_evol_data/protamine/PRM1/slr copying build/lib/ete3/test/ete_evol_data/protamine/PRM1/slr/rub -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/test/ete_evol_data/protamine/PRM1/slr copying build/lib/ete3/test/ete_evol_data/protamine/PRM1/slr/tmp.ctl -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/test/ete_evol_data/protamine/PRM1/slr copying build/lib/ete3/test/ete_evol_data/protamine/PRM1/alignments.fasta_ali -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/test/ete_evol_data/protamine/PRM1 creating /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/test/ete_evol_data/protamine/PRM1/paml creating /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/test/ete_evol_data/protamine/PRM1/paml/M7 copying build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M7/rst1 -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/test/ete_evol_data/protamine/PRM1/paml/M7 copying build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M7/lnf -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/test/ete_evol_data/protamine/PRM1/paml/M7 copying build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M7/2NG.dS -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/test/ete_evol_data/protamine/PRM1/paml/M7 copying build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M7/2NG.dN -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/test/ete_evol_data/protamine/PRM1/paml/M7 copying build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M7/algn -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/test/ete_evol_data/protamine/PRM1/paml/M7 copying build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M7/4fold.nuc -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/test/ete_evol_data/protamine/PRM1/paml/M7 copying build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M7/tree -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/test/ete_evol_data/protamine/PRM1/paml/M7 copying build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M7/2NG.t -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/test/ete_evol_data/protamine/PRM1/paml/M7 copying build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M7/rst -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/test/ete_evol_data/protamine/PRM1/paml/M7 copying build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M7/rub -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/test/ete_evol_data/protamine/PRM1/paml/M7 copying build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M7/tmp.ctl -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/test/ete_evol_data/protamine/PRM1/paml/M7 copying build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M7/M7.out -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/test/ete_evol_data/protamine/PRM1/paml/M7 creating /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/test/ete_evol_data/protamine/PRM1/paml/M2 copying build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M2/rst1 -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/test/ete_evol_data/protamine/PRM1/paml/M2 copying build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M2/lnf -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/test/ete_evol_data/protamine/PRM1/paml/M2 copying build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M2/2NG.dS -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/test/ete_evol_data/protamine/PRM1/paml/M2 copying build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M2/2NG.dN -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/test/ete_evol_data/protamine/PRM1/paml/M2 copying build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M2/M2.out -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/test/ete_evol_data/protamine/PRM1/paml/M2 copying build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M2/algn -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/test/ete_evol_data/protamine/PRM1/paml/M2 copying build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M2/4fold.nuc -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/test/ete_evol_data/protamine/PRM1/paml/M2 copying build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M2/tree -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/test/ete_evol_data/protamine/PRM1/paml/M2 copying build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M2/2NG.t -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/test/ete_evol_data/protamine/PRM1/paml/M2 copying build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M2/rst -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/test/ete_evol_data/protamine/PRM1/paml/M2 copying build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M2/rub -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/test/ete_evol_data/protamine/PRM1/paml/M2 copying build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M2/tmp.ctl -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/test/ete_evol_data/protamine/PRM1/paml/M2 creating /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/test/ete_evol_data/protamine/PRM1/paml/M0 copying build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M0/rst1 -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/test/ete_evol_data/protamine/PRM1/paml/M0 copying build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M0/lnf -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/test/ete_evol_data/protamine/PRM1/paml/M0 copying build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M0/2NG.dS -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/test/ete_evol_data/protamine/PRM1/paml/M0 copying build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M0/2NG.dN -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/test/ete_evol_data/protamine/PRM1/paml/M0 copying build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M0/algn -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/test/ete_evol_data/protamine/PRM1/paml/M0 copying build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M0/4fold.nuc -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/test/ete_evol_data/protamine/PRM1/paml/M0 copying build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M0/tree -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/test/ete_evol_data/protamine/PRM1/paml/M0 copying build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M0/2NG.t -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/test/ete_evol_data/protamine/PRM1/paml/M0 copying build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M0/rst -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/test/ete_evol_data/protamine/PRM1/paml/M0 copying build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M0/rub -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/test/ete_evol_data/protamine/PRM1/paml/M0 copying build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M0/out -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/test/ete_evol_data/protamine/PRM1/paml/M0 copying build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M0/tmp.ctl -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/test/ete_evol_data/protamine/PRM1/paml/M0 creating /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/test/ete_evol_data/protamine/PRM1/paml/M1 copying build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M1/rst1 -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/test/ete_evol_data/protamine/PRM1/paml/M1 copying build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M1/lnf -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/test/ete_evol_data/protamine/PRM1/paml/M1 copying build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M1/2NG.dS -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/test/ete_evol_data/protamine/PRM1/paml/M1 copying build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M1/2NG.dN -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/test/ete_evol_data/protamine/PRM1/paml/M1 copying build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M1/algn -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/test/ete_evol_data/protamine/PRM1/paml/M1 copying build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M1/4fold.nuc -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/test/ete_evol_data/protamine/PRM1/paml/M1 copying build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M1/tree -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/test/ete_evol_data/protamine/PRM1/paml/M1 copying build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M1/2NG.t -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/test/ete_evol_data/protamine/PRM1/paml/M1 copying build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M1/rst -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/test/ete_evol_data/protamine/PRM1/paml/M1 copying build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M1/rub -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/test/ete_evol_data/protamine/PRM1/paml/M1 copying build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M1/tmp.ctl -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/test/ete_evol_data/protamine/PRM1/paml/M1 copying build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M1/M1.out -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/test/ete_evol_data/protamine/PRM1/paml/M1 creating /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/test/ete_evol_data/protamine/PRM1/paml/M8 copying build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M8/rst1 -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/test/ete_evol_data/protamine/PRM1/paml/M8 copying build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M8/lnf -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/test/ete_evol_data/protamine/PRM1/paml/M8 copying build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M8/2NG.dS -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/test/ete_evol_data/protamine/PRM1/paml/M8 copying build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M8/2NG.dN -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/test/ete_evol_data/protamine/PRM1/paml/M8 copying build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M8/algn -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/test/ete_evol_data/protamine/PRM1/paml/M8 copying build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M8/4fold.nuc -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/test/ete_evol_data/protamine/PRM1/paml/M8 copying build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M8/tree -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/test/ete_evol_data/protamine/PRM1/paml/M8 copying build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M8/2NG.t -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/test/ete_evol_data/protamine/PRM1/paml/M8 copying build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M8/rst -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/test/ete_evol_data/protamine/PRM1/paml/M8 copying build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M8/rub -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/test/ete_evol_data/protamine/PRM1/paml/M8 copying build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M8/M8.out -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/test/ete_evol_data/protamine/PRM1/paml/M8 copying build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M8/tmp.ctl -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/test/ete_evol_data/protamine/PRM1/paml/M8 creating /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/test/ete_evol_data/protamine/PRM1/paml/fb copying build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/fb/rst1 -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/test/ete_evol_data/protamine/PRM1/paml/fb copying build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/fb/lnf -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/test/ete_evol_data/protamine/PRM1/paml/fb copying build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/fb/2NG.dS -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/test/ete_evol_data/protamine/PRM1/paml/fb copying build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/fb/2NG.dN -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/test/ete_evol_data/protamine/PRM1/paml/fb copying build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/fb/rst.fb -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/test/ete_evol_data/protamine/PRM1/paml/fb copying build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/fb/algn -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/test/ete_evol_data/protamine/PRM1/paml/fb copying build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/fb/4fold.nuc -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/test/ete_evol_data/protamine/PRM1/paml/fb copying build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/fb/tree -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/test/ete_evol_data/protamine/PRM1/paml/fb copying build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/fb/2NG.t -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/test/ete_evol_data/protamine/PRM1/paml/fb copying build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/fb/fb.out -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/test/ete_evol_data/protamine/PRM1/paml/fb copying build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/fb/rub -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/test/ete_evol_data/protamine/PRM1/paml/fb copying build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/fb/tmp.ctl -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/test/ete_evol_data/protamine/PRM1/paml/fb copying build/lib/ete3/test/ete_evol_data/protamine/PRM1/tree.nw -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/test/ete_evol_data/protamine/PRM1 creating /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/test/ete_evol_data/CladeModelCD copying build/lib/ete3/test/ete_evol_data/CladeModelCD/ECP_EDN_15.fasta -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/test/ete_evol_data/CladeModelCD copying build/lib/ete3/test/ete_evol_data/CladeModelCD/ECP_EDN_15.nw -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/test/ete_evol_data/CladeModelCD copying build/lib/ete3/test/test_xml_parsers.py -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/test copying build/lib/ete3/test/test_api.py -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/test copying build/lib/ete3/test/test_phylotree.py -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/test copying build/lib/ete3/test/test_circle_label.py -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/test copying build/lib/ete3/test/test_ncbiquery.py -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/test copying build/lib/ete3/test/test_evol.py -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/test copying build/lib/ete3/citation.py -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3 creating /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/evol copying build/lib/ete3/evol/evoltree.py -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/evol copying build/lib/ete3/evol/__init__.py -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/evol creating /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/evol/parser copying build/lib/ete3/evol/parser/codemlparser.py -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/evol/parser copying build/lib/ete3/evol/parser/__init__.py -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/evol/parser copying build/lib/ete3/evol/parser/slrparser.py -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/evol/parser copying build/lib/ete3/evol/model.py -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/evol copying build/lib/ete3/evol/utils.py -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/evol copying build/lib/ete3/evol/control.py -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/evol creating /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/coretype copying build/lib/ete3/coretype/tree.py -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/coretype copying build/lib/ete3/coretype/__init__.py -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/coretype copying build/lib/ete3/coretype/arraytable.py -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/coretype copying build/lib/ete3/coretype/seqgroup.py -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/coretype creating /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/orthoxml copying build/lib/ete3/orthoxml/_orthoxml.py -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/orthoxml copying build/lib/ete3/orthoxml/__init__.py -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/orthoxml byte-compiling /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/_ph.py to _ph.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/__init__.py to __init__.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/version.py to version.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/webplugin/webapp.py to webapp.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/webplugin/__init__.py to __init__.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/treeview/qt4_circular_render.py to qt4_circular_render.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/treeview/main.py to main.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/treeview/templates.py to templates.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/treeview/qt4_render.py to qt4_render.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/treeview/layouts.py to layouts.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/treeview/__init__.py to __init__.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/treeview/_open_newick.py to _open_newick.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/treeview/faces.py to faces.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/treeview/_mainwindow.py to _mainwindow.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/treeview/qt4_face_render.py to qt4_face_render.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/treeview/_show_newick.py to _show_newick.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/treeview/qt4_rect_render.py to qt4_rect_render.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/treeview/qt.py to qt.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/treeview/svg_colors.py to svg_colors.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/treeview/_about.py to _about.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/treeview/_show_codeml.py to _show_codeml.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/treeview/drawer.py to drawer.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/treeview/qt4_gui.py to qt4_gui.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/treeview/ete_resources_rc.py to ete_resources_rc.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/treeview/_search_dialog.py to _search_dialog.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/treeview/node_gui_actions.py to node_gui_actions.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/parser/__init__.py to __init__.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/parser/phylip.py to phylip.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/parser/text_arraytable.py to text_arraytable.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/parser/paml.py to paml.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/parser/fasta.py to fasta.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/parser/newick.py to newick.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/phyloxml/__init__.py to __init__.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/phyloxml/_phyloxml.py to _phyloxml.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/phyloxml/_phyloxml_tree.py to _phyloxml_tree.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/tools/ete_expand.py to ete_expand.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/tools/ete_evol.py to ete_evol.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/tools/ete_build_lib/db.py to db.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/tools/ete_build_lib/visualize.py to visualize.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/tools/ete_build_lib/seqio.py to seqio.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/tools/ete_build_lib/curses_gui.py to curses_gui.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/tools/ete_build_lib/master_job.py to master_job.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/tools/ete_build_lib/getch.py to getch.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/tools/ete_build_lib/__init__.py to __init__.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/tools/ete_build_lib/interface.py to interface.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/tools/ete_build_lib/configcheck.py to configcheck.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/tools/ete_build_lib/configobj.py to configobj.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/tools/ete_build_lib/apps.py to apps.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/tools/ete_build_lib/workflow/supermatrix.py to supermatrix.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/tools/ete_build_lib/workflow/common.py to common.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/tools/ete_build_lib/workflow/__init__.py to __init__.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/tools/ete_build_lib/workflow/genetree.py to genetree.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/tools/ete_build_lib/validate.py to validate.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/tools/ete_build_lib/logger.py to logger.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/tools/ete_build_lib/utils.py to utils.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/tools/ete_build_lib/sge.py to sge.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/tools/ete_build_lib/ordereddict.py to ordereddict.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/tools/ete_build_lib/master_task.py to master_task.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/tools/ete_build_lib/errors.py to errors.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/tools/ete_build_lib/scheduler.py to scheduler.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/tools/ete_build_lib/task/phyml.py to phyml.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/tools/ete_build_lib/task/clustalo.py to clustalo.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/tools/ete_build_lib/task/tcoffee.py to tcoffee.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/tools/ete_build_lib/task/msf.py to msf.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/tools/ete_build_lib/task/dummytree.py to dummytree.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/tools/ete_build_lib/task/__init__.py to __init__.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/tools/ete_build_lib/task/iqtree.py to iqtree.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/tools/ete_build_lib/task/jmodeltest.py to jmodeltest.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/tools/ete_build_lib/task/prottest.py to prottest.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/tools/ete_build_lib/task/dummyalg.py to dummyalg.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/tools/ete_build_lib/task/muscle.py to muscle.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/tools/ete_build_lib/task/fasttree.py to fasttree.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/tools/ete_build_lib/task/merger.py to merger.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/tools/ete_build_lib/task/dialigntx.py to dialigntx.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/tools/ete_build_lib/task/concat_alg.py to concat_alg.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/tools/ete_build_lib/task/cog_creator.py to cog_creator.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/tools/ete_build_lib/task/uhire.py to uhire.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/tools/ete_build_lib/task/mafft.py to mafft.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/tools/ete_build_lib/task/trimal.py to trimal.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/tools/ete_build_lib/task/raxml.py to raxml.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/tools/ete_build_lib/task/cog_selector.py to cog_selector.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/tools/ete_build_lib/task/meta_aligner.py to meta_aligner.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/tools/ete_build_lib/task/prottest2.py to prottest2.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/tools/ete_build_lib/task/pmodeltest.py to pmodeltest.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/tools/common.py to common.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/tools/__init__.py to __init__.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/tools/ete_maptrees.py to ete_maptrees.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/tools/ete_build.py to ete_build.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/tools/ete_mod.py to ete_mod.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/tools/ete_ncbiquery.py to ete_ncbiquery.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/tools/ete_compare.py to ete_compare.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/tools/ete_annotate.py to ete_annotate.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/tools/ete_extract.py to ete_extract.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/tools/ete_upgrade_tools.py to ete_upgrade_tools.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/tools/ete.py to ete.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/tools/utils.py to utils.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/tools/ete_generate.py to ete_generate.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/tools/ete_view.py to ete_view.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/tools/ete_split.py to ete_split.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/nexml/__init__.py to __init__.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/nexml/_nexml.py to _nexml.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/nexml/_nexml_tree.py to _nexml_tree.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/ncbi_taxonomy/__init__.py to __init__.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/ncbi_taxonomy/ncbiquery.py to ncbiquery.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/phylo/__init__.py to __init__.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/phylo/spoverlap.py to spoverlap.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/phylo/evolevents.py to evolevents.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/phylo/reconciliation.py to reconciliation.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/phylo/phylotree.py to phylotree.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/clustering/clustertree.py to clustertree.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/clustering/__init__.py to __init__.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/clustering/clustvalidation.py to clustvalidation.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/utils.py to utils.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/phylomedb/phylomeDB3.py to phylomeDB3.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/phylomedb/__init__.py to __init__.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/phylomedb/phylomeDB.py to phylomeDB.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/test/test_arraytable.py to test_arraytable.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/test/test_ete_build/test_sptree.py to test_sptree.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/test/test_ete_build/test_manual_alg.py to test_manual_alg.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/test/test_ete_build/__main__.py to __main__.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/test/test_ete_build/__init__.py to __init__.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/test/test_ete_build/test_modeltest.py to test_modeltest.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/test/test_ete_build/test_genetree.py to test_genetree.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/test/test_clustertree.py to test_clustertree.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/test/test_seqgroup.py to test_seqgroup.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/test/test_interop.py to test_interop.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/test/test_all.py to test_all.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/test/test_issue258/issue258.py to issue258.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/test/__init__.py to __init__.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/test/test_treeview/barchart_and_piechart_faces.py to barchart_and_piechart_faces.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/test/test_treeview/face_rotation.py to face_rotation.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/test/test_treeview/test_all_treeview.py to test_all_treeview.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/test/test_treeview/__init__.py to __init__.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/test/test_treeview/node_style.py to node_style.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/test/test_treeview/new_seq_face.py to new_seq_face.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/test/test_treeview/face_grid.py to face_grid.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/test/test_treeview/img_faces.py to img_faces.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/test/test_treeview/item_faces.py to item_faces.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/test/test_treeview/random_draw.py to random_draw.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/test/test_treeview/tree_faces.py to tree_faces.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/test/test_treeview/floating_piecharts.py to floating_piecharts.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/test/test_treeview/node_background.py to node_background.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/test/test_treeview/face_positions.py to face_positions.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/test/test_treeview/phylotree_visualization.py to phylotree_visualization.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/test/test_treeview/seq_motif_faces.py to seq_motif_faces.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/test/test_treeview/bubble_map.py to bubble_map.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/test/test_tree.py to test_tree.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/test/test_ete_evol.py to test_ete_evol.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/test/datasets.py to datasets.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/test/test_xml_parsers.py to test_xml_parsers.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/test/test_api.py to test_api.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/test/test_phylotree.py to test_phylotree.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/test/test_circle_label.py to test_circle_label.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/test/test_ncbiquery.py to test_ncbiquery.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/test/test_evol.py to test_evol.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/citation.py to citation.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/evol/evoltree.py to evoltree.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/evol/__init__.py to __init__.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/evol/parser/codemlparser.py to codemlparser.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/evol/parser/__init__.py to __init__.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/evol/parser/slrparser.py to slrparser.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/evol/model.py to model.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/evol/utils.py to utils.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/evol/control.py to control.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/coretype/tree.py to tree.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/coretype/__init__.py to __init__.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/coretype/arraytable.py to arraytable.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/coretype/seqgroup.py to seqgroup.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/orthoxml/_orthoxml.py to _orthoxml.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3/orthoxml/__init__.py to __init__.cpython-311.pyc writing byte-compilation script '/tmp/tmppukxgvks.py' /usr/local/bin/python3.11 /tmp/tmppukxgvks.py removing /tmp/tmppukxgvks.py running install_data creating /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/ete3 creating /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/ete3/tools copying ete3/tools/ete_build.cfg -> /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/ete3/tools running install_egg_info Copying ete3.egg-info to /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/lib/python3.11/site-packages/ete3-3.1.3-py3.11.egg-info running install_scripts Installing ete3 script to /wrkdirs/usr/ports/biology/py-ete3/work-py311/stage/usr/local/bin writing list of installed files to '/wrkdirs/usr/ports/biology/py-ete3/work-py311/.PLIST.pymodtmp' ===> Creating unique files: Move MAN files needing SUFFIX ===> Creating unique files: Move files needing SUFFIX Move: bin/ete3 --> bin/ete3-3.11 Link: @bin/ete3 --> bin/ete3-3.11 ====> Compressing man pages (compress-man) =========================================================================== =================================================== ===== env: 'PKG_NOTES=build_timestamp ports_top_git_hash ports_top_checkout_unclean port_git_hash port_checkout_unclean built_by' 'PKG_NOTE_build_timestamp=2025-12-29T12:00:42+0000' 'PKG_NOTE_ports_top_git_hash=3dd9e2202282' 'PKG_NOTE_ports_top_checkout_unclean=yes' 'PKG_NOTE_port_git_hash=a6233e5a2fdf' 'PKG_NOTE_port_checkout_unclean=no' 'PKG_NOTE_built_by=poudriere-git-3.4.4' NO_DEPENDS=yes USER=nobody UID=65534 GID=65534 ===> Building packages for py311-ete3-3.1.3_3 ===> Building py311-ete3-3.1.3_3 =========================================================================== =>> Cleaning up wrkdir ===> Cleaning for py311-ete3-3.1.3_3 build of biology/py-ete3@py311 | py311-ete3-3.1.3_3 ended at Mon Dec 29 07:01:06 EST 2025 build time: 00:00:25